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| GenBank Identifier | RefSeq Acc. | Name |
| 18845965 | NC_003409.1 | Human herpesvirus 8 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13311 | + | 63687 | 89 | 23 | -25.3 | NP_572096 | 5' arm 3' arm | ||
| 13343 | + | 121536 | 87 | 24 | -25.2 | 5' arm 3' arm | |||
| 13358 | + | 134778 | 89 | 23.5 | -25.2 | 5' arm 3' arm | |||
| 13378 | - | 32046 | 89 | 21 | -25.1 | NP_572069 | 5' arm 3' arm | ||
| 13384 | - | 42850 | 89 | 20.5 | -25 | 5' arm 3' arm | |||
| 13468 | - | 134471 | 89 | 21 | -24.9 | NP_572132 | 5' arm 3' arm | ||
| 13333 | + | 107946 | 90 | 24 | -24.9 | NP_572120 | 5' arm 3' arm | ||
| 13418 | - | 94911 | 90 | 21 | -24.8 | NP_572114 | 5' arm 3' arm | ||
| 13380 | - | 35872 | 88 | 19.5 | -24.7 | NP_572073 | 5' arm 3' arm | ||
| 13329 | + | 95613 | 90 | 24 | -24.7 | NP_572115 | 5' arm 3' arm | ||
| 13302 | + | 49903 | 86 | 22 | -24.7 | NP_572081 | 5' arm 3' arm | ||
| 13273 | + | 8715 | 90 | 22 | -24.6 | NP_572056 | 5' arm 3' arm | ||
| 13349 | + | 130633 | 90 | 21 | -24.5 | NP_572132 | 5' arm 3' arm | ||
| 13454 | - | 118044 | 86 | 22.5 | -24.5 | NP_572126 | kshv-mir-K12-10a | 3' arm | |
| 13335 | + | 111924 | 90 | 20.5 | -24.5 | NP_572121 | 5' arm 3' arm | ||
| 13385 | - | 43748 | 88 | 20 | -24.5 | NP_572077 | 5' arm 3' arm | ||
| 13355 | + | 133107 | 84 | 21 | -24.3 | NP_572132 | 5' arm 3' arm | ||
| 13425 | - | 102645 | 90 | 19 | -24.2 | NP_572119 | 5' arm 3' arm | ||
| 13428 | - | 104859 | 89 | 25.5 | -24.2 | NP_572120 | 5' arm 3' arm | ||
| 13395 | - | 62056 | 90 | 22.5 | -24.19 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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