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| GenBank Identifier | RefSeq Acc. | Name |
| 13242472 | NC_002687.1 | Ectocarpus siliculosus virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10441 | - | 11013 | 90 | 21.5 | -25.2 | NP_597942 | 5' arm 3' arm | ||
| 10289 | + | 10576 | 89 | 19 | -20.4 | NP_597942 | 5' arm 3' arm | ||
| 10597 | - | 333263 | 87 | 19.5 | -24.4 | NP_077716 | 5' arm 3' arm | ||
| 10435 | + | 332955 | 90 | 21.5 | -28.9 | NP_077716 | 5' arm 3' arm | ||
| 10430 | + | 322369 | 90 | 23 | -24.1 | NP_077709 | 5' arm 3' arm | ||
| 10392 | + | 246236 | 90 | 21 | -23.5 | NP_077707 | 5' arm 3' arm | ||
| 10429 | + | 320476 | 86 | 22 | -20.9 | NP_077707 | 5' arm 3' arm | ||
| 10579 | - | 313266 | 88 | 21.5 | -27.3 | NP_077701 | 5' arm 3' arm | ||
| 10421 | + | 301830 | 89 | 20 | -27.8 | NP_077698 | 5' arm 3' arm | ||
| 10420 | + | 301388 | 89 | 23 | -21.3 | NP_077698 | 5' arm 3' arm | ||
| 10572 | - | 300905 | 86 | 19 | -20.9 | NP_077698 | 5' arm 3' arm | ||
| 10422 | + | 302752 | 90 | 19.5 | -29.3 | NP_077698 | 5' arm 3' arm | ||
| 10418 | + | 299154 | 89 | 21 | -26 | NP_077696 | 5' arm 3' arm | ||
| 10569 | - | 297248 | 86 | 19 | -24.4 | NP_077695 | 5' arm 3' arm | ||
| 10570 | - | 297765 | 88 | 19.5 | -23.5 | NP_077695 | 5' arm 3' arm | ||
| 10571 | - | 297923 | 89 | 19 | -22.8 | NP_077695 | 5' arm 3' arm | ||
| 10568 | - | 296189 | 90 | 20.5 | -22.8 | NP_077694 | 5' arm 3' arm | ||
| 10567 | - | 295388 | 90 | 21.5 | -25.34 | NP_077694 | 5' arm 3' arm | ||
| 10414 | + | 295469 | 90 | 22 | -22 | NP_077694 | 5' arm 3' arm | ||
| 10417 | + | 296100 | 90 | 19.5 | -24 | NP_077694 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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