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| GenBank Identifier | RefSeq Acc. | Name |
| 13242472 | NC_002687.1 | Ectocarpus siliculosus virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 10580 | - | 316276 | 88 | 21.5 | -22.7 | NP_597950 | 5' arm 3' arm | ||
| 10574 | - | 307725 | 90 | 19.5 | -25.3 | NP_597949 | 5' arm 3' arm | ||
| 10380 | + | 223638 | 87 | 19.5 | -23.3 | NP_597948 | 5' arm 3' arm | ||
| 10384 | + | 226695 | 87 | 20.5 | -27.2 | NP_597948 | 5' arm 3' arm | ||
| 10382 | + | 224562 | 89 | 29 | -28 | NP_597948 | 5' arm 3' arm | ||
| 10383 | + | 224652 | 89 | 20 | -21.9 | NP_597948 | 5' arm 3' arm | ||
| 10381 | + | 224439 | 89 | 28.5 | -25.8 | NP_597948 | 5' arm 3' arm | ||
| 10385 | + | 227165 | 89 | 22 | -25.6 | NP_597948 | 5' arm 3' arm | ||
| 10379 | + | 222030 | 90 | 20 | -25.9 | NP_597947 | 5' arm 3' arm | ||
| 10533 | - | 208576 | 89 | 21 | -20.7 | NP_597946 | 5' arm 3' arm | ||
| 10532 | - | 208327 | 89 | 20.5 | -29 | NP_597946 | 5' arm 3' arm | ||
| 10534 | - | 208723 | 89 | 19.5 | -20.7 | NP_597946 | 5' arm 3' arm | ||
| 10355 | + | 199307 | 90 | 21.5 | -20.2 | NP_597945 | 5' arm 3' arm | ||
| 10357 | + | 199597 | 88 | 21.5 | -21.5 | NP_597945 | 5' arm 3' arm | ||
| 10356 | + | 199459 | 81 | 20 | -21 | NP_597945 | 5' arm 3' arm | ||
| 10448 | - | 19334 | 87 | 19 | -22.7 | NP_597944 | 5' arm 3' arm | ||
| 10525 | - | 195345 | 87 | 19 | -21.6 | NP_597943 | 5' arm 3' arm | ||
| 10540 | - | 220962 | 87 | 19 | -22.7 | NP_597943 | 5' arm 3' arm | ||
| 10289 | + | 10576 | 89 | 19 | -20.4 | NP_597942 | 5' arm 3' arm | ||
| 10288 | + | 9980 | 89 | 19 | -23.6 | NP_597942 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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