miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
31514	-	3419	88	27.5	-21	YP_184900		5' arm      3' arm
31508	+	23622	90	21.5	-20.5	YP_184894		5' arm      3' arm
31507	+	19658	88	20	-25.3	YP_184893		5' arm      3' arm
31505	-	27555	90	24.5	-27.8	YP_184887		5' arm      3' arm
31490	-	13138	87	23	-25.1	YP_184868		5' arm      3' arm
31474	-	10853	90	21	-21.9	YP_184853		5' arm      3' arm
31439	+	6243	88	27.5	-21	YP_184800		5' arm      3' arm
31436	-	2503	90	23.5	-22.6	YP_184799		5' arm      3' arm
31435	-	201	88	20	-31	YP_184798		5' arm      3' arm
31430	+	19726	88	23	-25.06	YP_184796		5' arm      3' arm
31426	+	11118	89	25	-24.2	YP_184790		5' arm      3' arm
31423	-	29593	90	22.5	-27.2	YP_184779		5' arm      3' arm
31413	+	6559	90	23	-35.2	YP_184775		5' arm      3' arm
31412	+	6136	90	23	-25.7	YP_184775		5' arm      3' arm
31418	-	6227	90	21.5	-28.6	YP_184775		5' arm      3' arm
31419	-	6650	90	24.5	-32.3	YP_184775		5' arm      3' arm
31429	+	14448	76	26	-30.6			5' arm      3' arm
31427	+	12337	86	22.5	-21.4			5' arm      3' arm
31428	+	13190	90	28	-20.3			5' arm      3' arm
31414	+	6668	90	24.5	-25.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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