miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
57659643 NC_006658.1 Cotesia congregata virus segment Circle31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31500 + 27982 90 19 -28.1 5' arm      3' arm
31452 + 12959 90 19 -22.4 5' arm      3' arm
31486 - 6631 87 19 -22.9 5' arm      3' arm
31449 - 4090 90 19 -28.8 5' arm      3' arm
31431 + 22700 90 19.5 -19.8 5' arm      3' arm
31485 - 753 90 19.5 -23.3 5' arm      3' arm
31406 - 9389 90 19.5 -26.6 5' arm      3' arm
31425 + 5644 90 19.5 -20.5 5' arm      3' arm
31492 - 8503 90 19.5 -30.5 5' arm      3' arm
31407 - 12402 90 19.5 -26.6 5' arm      3' arm
31498 + 25183 88 19.5 -20.9 5' arm      3' arm
31507 + 19658 88 20 -25.3 YP_184893 5' arm      3' arm
31435 - 201 88 20 -31 YP_184798 5' arm      3' arm
31471 - 3416 87 20 -21.7 5' arm      3' arm
31468 + 3618 90 20 -28.7 5' arm      3' arm
31473 - 4615 90 20 -33.3 5' arm      3' arm
31484 + 667 82 20 -31 5' arm      3' arm
31520 + 10946 88 20.5 -28.1 5' arm      3' arm
31470 + 14344 90 20.5 -27.9 5' arm      3' arm
31501 + 28072 89 20.5 -22.1 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.