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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
29117 | - | 141421 | 89 | 28.5 | -33.1 | 3' arm | |||
29116 | - | 139221 | 90 | 20 | -29.5 | 5' arm 3' arm | |||
29115 | - | 138990 | 90 | 19.5 | -23.5 | 5' arm 3' arm | |||
29114 | - | 138895 | 87 | 21 | -23.1 | 5' arm 3' arm | |||
29113 | - | 134378 | 89 | 23 | -29.9 | 5' arm 3' arm | |||
29112 | - | 134214 | 86 | 21 | -23.4 | 5' arm 3' arm | |||
29111 | - | 134096 | 89 | 21.5 | -22.1 | 5' arm 3' arm | |||
29110 | - | 133946 | 89 | 25 | -19.9 | 5' arm 3' arm | |||
29109 | - | 133631 | 86 | 21.5 | -22.9 | 5' arm 3' arm | |||
29108 | - | 133188 | 81 | 20 | -30 | 5' arm 3' arm | |||
29107 | - | 131020 | 90 | 23 | -26.6 | YP_068001 | 5' arm 3' arm | ||
29106 | - | 130411 | 89 | 22 | -19.7 | YP_068001 | 5' arm 3' arm | ||
29105 | - | 129747 | 90 | 23.5 | -26.8 | YP_068001 | 5' arm 3' arm | ||
29104 | - | 129623 | 90 | 22.5 | -22.2 | 5' arm 3' arm | |||
29103 | - | 129272 | 89 | 22.5 | -21 | 5' arm 3' arm | |||
29102 | - | 128507 | 89 | 21 | -23.7 | YP_068000 | 5' arm 3' arm | ||
29101 | - | 128090 | 89 | 20.5 | -25.5 | YP_068000 | 5' arm 3' arm | ||
29100 | - | 127735 | 90 | 20.5 | -20 | YP_068000 | 5' arm 3' arm | ||
29099 | - | 126600 | 90 | 19.5 | -23.7 | YP_067999 | 5' arm 3' arm | ||
29098 | - | 126276 | 89 | 23 | -29.4 | YP_067998 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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