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GenBank Identifier | RefSeq Acc. | Name |
51518014 | NC_006146.1 | Cercopithecine herpesvirus 15 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
29097 | - | 126017 | 90 | 21 | -22.3 | YP_067998 | 5' arm 3' arm | ||
29096 | - | 125285 | 89 | 23 | -23.9 | YP_067998 | 5' arm 3' arm | ||
29095 | - | 123158 | 90 | 21.5 | -27.6 | YP_067997 | 5' arm 3' arm | ||
29094 | - | 121420 | 88 | 19.5 | -21.5 | YP_067996 | 5' arm 3' arm | ||
29093 | - | 121316 | 88 | 21 | -26 | YP_067995 | 5' arm 3' arm | ||
29092 | - | 121020 | 89 | 21.5 | -25.1 | YP_067995 | 5' arm 3' arm | ||
29091 | - | 120917 | 89 | 26 | -31.4 | YP_067995 | 5' arm 3' arm | ||
29090 | - | 120698 | 89 | 19.5 | -20.31 | YP_067995 | 5' arm 3' arm | ||
29089 | - | 119843 | 90 | 22 | -22.8 | YP_067995 | 5' arm 3' arm | ||
29088 | - | 118638 | 90 | 20.5 | -24.4 | YP_067994 | 5' arm 3' arm | ||
29087 | - | 115234 | 86 | 19.5 | -23.3 | YP_067994 | 5' arm 3' arm | ||
29086 | - | 114474 | 86 | 20 | -21.6 | YP_067993 | 5' arm 3' arm | ||
29085 | - | 113283 | 79 | 21 | -32.7 | YP_067992 | 5' arm 3' arm | ||
29084 | - | 111725 | 85 | 24 | -25.4 | YP_067987 | 5' arm 3' arm | ||
29083 | - | 111639 | 88 | 20.5 | -29.7 | YP_067987 | 5' arm 3' arm | ||
29082 | - | 111367 | 83 | 20 | -24.1 | YP_067987 | 5' arm 3' arm | ||
29081 | - | 109738 | 88 | 20.5 | -23.4 | YP_067989 | 5' arm 3' arm | ||
29080 | - | 108693 | 90 | 19.5 | -24.6 | YP_067989 | 5' arm 3' arm | ||
29079 | - | 108579 | 89 | 19.5 | -23.5 | YP_067989 | 5' arm 3' arm | ||
29078 | - | 108162 | 90 | 21.5 | -21.4 | YP_067988 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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