miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
51518014 NC_006146.1 Cercopithecine herpesvirus 15

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
29097 - 126017 90 21 -22.3 YP_067998 5' arm      3' arm
29096 - 125285 89 23 -23.9 YP_067998 5' arm      3' arm
29095 - 123158 90 21.5 -27.6 YP_067997 5' arm      3' arm
29094 - 121420 88 19.5 -21.5 YP_067996 5' arm      3' arm
29093 - 121316 88 21 -26 YP_067995 5' arm      3' arm
29092 - 121020 89 21.5 -25.1 YP_067995 5' arm      3' arm
29091 - 120917 89 26 -31.4 YP_067995 5' arm      3' arm
29090 - 120698 89 19.5 -20.31 YP_067995 5' arm      3' arm
29089 - 119843 90 22 -22.8 YP_067995 5' arm      3' arm
29088 - 118638 90 20.5 -24.4 YP_067994 5' arm      3' arm
29087 - 115234 86 19.5 -23.3 YP_067994 5' arm      3' arm
29086 - 114474 86 20 -21.6 YP_067993 5' arm      3' arm
29085 - 113283 79 21 -32.7 YP_067992 5' arm      3' arm
29084 - 111725 85 24 -25.4 YP_067987 5' arm      3' arm
29083 - 111639 88 20.5 -29.7 YP_067987 5' arm      3' arm
29082 - 111367 83 20 -24.1 YP_067987 5' arm      3' arm
29081 - 109738 88 20.5 -23.4 YP_067989 5' arm      3' arm
29080 - 108693 90 19.5 -24.6 YP_067989 5' arm      3' arm
29079 - 108579 89 19.5 -23.5 YP_067989 5' arm      3' arm
29078 - 108162 90 21.5 -21.4 YP_067988 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.