miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
85	+	1917	89	21.5	-22.2	AP_000142		5' arm      3' arm
86	+	2820	87	20	-29.5			5' arm      3' arm
87	+	4024	86	22	-21.3			5' arm      3' arm
88	+	4321	88	23.5	-22.5			5' arm      3' arm
89	+	4513	86	19	-21.9			5' arm      3' arm
90	+	4646	82	20.5	-21.6			5' arm      3' arm
91	+	5074	90	22	-23.2	AP_000143		5' arm      3' arm
92	+	5232	88	20.5	-30.1	AP_000143		5' arm      3' arm
93	+	6013	90	21.5	-23.1	AP_000143		5' arm      3' arm
94	+	6970	90	19	-22.7	AP_000143		5' arm      3' arm
95	+	8228	89	23	-21.6	AP_000143		5' arm      3' arm
96	+	8850	89	20	-20.1	AP_000144		5' arm      3' arm
97	+	10258	90	19	-22.6			5' arm      3' arm
98	+	10920	90	21	-27.3	AP_000145		5' arm      3' arm
99	+	11922	85	20.5	-21.06	AP_000146		5' arm      3' arm
100	+	13090	89	24	-25.2	AP_000146		5' arm      3' arm
101	+	13545	88	19.5	-24.6	AP_000147		5' arm      3' arm
102	+	14209	89	19.5	-23.4	AP_000147		5' arm      3' arm
103	+	16010	90	19.5	-22.3			5' arm      3' arm
104	+	17324	88	21.5	-29.5	AP_000149		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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