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| GenBank Identifier | RefSeq Acc. | Name |
| 58042841 | NC_005137.2 | Choristoneura fumiferana defective nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 22914 | + | 129165 | 86 | 22.5 | -19.8 | NP_932757 | 5' arm 3' arm | ||
| 22911 | + | 122611 | 90 | 21.5 | -23.2 | NP_932750 | 5' arm 3' arm | ||
| 22912 | + | 122824 | 89 | 24.5 | -23.9 | NP_932750 | 5' arm 3' arm | ||
| 22971 | - | 122531 | 89 | 19 | -30.3 | NP_932750 | 5' arm 3' arm | ||
| 22970 | - | 120468 | 87 | 20 | -24.9 | NP_932749 | 5' arm 3' arm | ||
| 22968 | - | 119776 | 87 | 22.5 | -21 | NP_932748 | 5' arm 3' arm | ||
| 22969 | - | 119889 | 89 | 23 | -25.6 | NP_932748 | 5' arm 3' arm | ||
| 22967 | - | 119272 | 87 | 20.5 | -25.87 | NP_932747 | 5' arm 3' arm | ||
| 22910 | + | 117651 | 85 | 21 | -26.6 | NP_932744 | 5' arm 3' arm | ||
| 22966 | - | 116448 | 89 | 24 | -21.5 | NP_932743 | 5' arm 3' arm | ||
| 22909 | + | 112529 | 85 | 20 | -30.8 | NP_932741 | 5' arm 3' arm | ||
| 22908 | + | 111997 | 81 | 24 | -26 | NP_932741 | 5' arm 3' arm | ||
| 22965 | - | 112765 | 90 | 19.5 | -23.6 | NP_932741 | 5' arm 3' arm | ||
| 22907 | + | 110700 | 90 | 22.5 | -20.6 | NP_932739 | 5' arm 3' arm | ||
| 22906 | + | 110500 | 88 | 19.5 | -24.9 | NP_932739 | 5' arm 3' arm | ||
| 22964 | - | 110974 | 88 | 20 | -21.8 | NP_932739 | 5' arm 3' arm | ||
| 22963 | - | 109583 | 89 | 19.5 | -24.1 | NP_932738 | 5' arm 3' arm | ||
| 22905 | + | 108679 | 89 | 19.5 | -25.1 | NP_932737 | 5' arm 3' arm | ||
| 22961 | - | 108251 | 90 | 21 | -22.8 | NP_932737 | 5' arm 3' arm | ||
| 22962 | - | 108341 | 74 | 19 | -19.4 | NP_932737 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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