miRNA display CGI


Results 1 - 20 of 180 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 235000 0.67 0.92641
Target:  5'- aCGCGCGUCuguGUCUguuugaGUCCCCa -3'
miRNA:   3'- gGCGCGCGGu--CGGG------UAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 234569 0.69 0.841368
Target:  5'- cCCGCGgGCC-GCCgGgcgCCCCu -3'
miRNA:   3'- -GGCGCgCGGuCGGgUa--GGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 234184 0.72 0.68546
Target:  5'- gCCGCGCGCCAcacggcGCCCAUggCCUg -3'
miRNA:   3'- -GGCGCGCGGU------CGGGUA--GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233743 0.66 0.931859
Target:  5'- gUCGCGCGCgGgguGCCCAcgCCCa -3'
miRNA:   3'- -GGCGCGCGgU---CGGGUa-GGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233644 0.75 0.496209
Target:  5'- aCCGuCGUGCCGGCCCA-CCgCCg -3'
miRNA:   3'- -GGC-GCGCGGUCGGGUaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233471 0.66 0.951063
Target:  5'- aCCGCgcccaGCGCCAGCCag-CCgCa -3'
miRNA:   3'- -GGCG-----CGCGGUCGGguaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233426 0.68 0.88105
Target:  5'- cCCGU-CGCCGGCCCcgCCgCg -3'
miRNA:   3'- -GGCGcGCGGUCGGGuaGGgG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233351 0.69 0.823993
Target:  5'- cCUGCcaucGCGCaCGGCgCGUCCCCg -3'
miRNA:   3'- -GGCG----CGCG-GUCGgGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 233224 0.66 0.951063
Target:  5'- gCCGCGCGgCGGCUgcUgCCCg -3'
miRNA:   3'- -GGCGCGCgGUCGGguAgGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233146 0.66 0.941976
Target:  5'- -gGCGCG-CGGCaCgGUCCCCg -3'
miRNA:   3'- ggCGCGCgGUCG-GgUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233111 0.66 0.946647
Target:  5'- aCgGCGC-CCAGCUCGUCCa- -3'
miRNA:   3'- -GgCGCGcGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233039 0.67 0.895277
Target:  5'- cCCGCGCGCagaaagugcgaCAGCUCcgCCgCCa -3'
miRNA:   3'- -GGCGCGCG-----------GUCGGGuaGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 233008 0.66 0.946647
Target:  5'- cUCGCGCcCCAGCgCCAgcgCgCCCa -3'
miRNA:   3'- -GGCGCGcGGUCG-GGUa--G-GGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 221379 0.66 0.941976
Target:  5'- cCCGCucCGCCAccccgcGCCCG-CCCCa -3'
miRNA:   3'- -GGCGc-GCGGU------CGGGUaGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 219052 0.68 0.865858
Target:  5'- aCCGUaacGCGCCAGUUCGUCCa- -3'
miRNA:   3'- -GGCG---CGCGGUCGGGUAGGgg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 218316 0.7 0.777389
Target:  5'- aCGCGCGCCuGCCagaugguaaacgCGUCCCa -3'
miRNA:   3'- gGCGCGCGGuCGG------------GUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 214222 0.7 0.787033
Target:  5'- gCUGCGCGCC--UCCGUCCUCg -3'
miRNA:   3'- -GGCGCGCGGucGGGUAGGGG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 213213 0.68 0.857915
Target:  5'- gUGCGCcaacggcauaguGCCAGCCCuAUCCuCCa -3'
miRNA:   3'- gGCGCG------------CGGUCGGG-UAGG-GG- -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 + 212069 0.67 0.902017
Target:  5'- -gGCGC-CCAGgCCGUCCCg -3'
miRNA:   3'- ggCGCGcGGUCgGGUAGGGg -5'
MIMAT0003343 hcmv-miR-UL70-3p -53.7 NC_006273.1 - 211439 0.75 0.486221
Target:  5'- cCCGcCGCGCCGG-CCGUCUCCa -3'
miRNA:   3'- -GGC-GCGCGGUCgGGUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.