miRNA display CGI


Results 41 - 60 of 148 are showing below:
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Acc. No. Name Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 162849 0.7 0.978907
Target:  5'- --cGGGGGC-CCGGGCuccUACAAc -3'
miRNA:   3'- auuCCCCUGuGGUCCGu--AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 142625 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 142726 0.7 0.978907
Target:  5'- cGGGGGGugGCC-GGC-UGCAGc -3'
miRNA:   3'- aUUCCCCugUGGuCCGuAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 2857 0.69 0.985343
Target:  5'- -uGGGGGccaucaaGCACCAGGCAcuugACAc -3'
miRNA:   3'- auUCCCC-------UGUGGUCCGUa---UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 153904 0.69 0.985534
Target:  5'- uUGAGGGGcGC-CCAGGCGUcCGGg -3'
miRNA:   3'- -AUUCCCC-UGuGGUCCGUAuGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 171194 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 160164 0.69 0.985534
Target:  5'- aGAGGGGGCgACCAGaGCGcuggacaccUACAAc -3'
miRNA:   3'- aUUCCCCUG-UGGUC-CGU---------AUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 169597 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 + 170134 0.69 0.985534
Target:  5'- --cGGGGGCugCGGGCGguggaugGCGg -3'
miRNA:   3'- auuCCCCUGugGUCCGUa------UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 30658 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 24520 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 12244 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 33727 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 21451 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 27589 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 15313 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 18382 0.69 0.987345
Target:  5'- gGAGGGGAgCAgCAGGguUGCu- -3'
miRNA:   3'- aUUCCCCU-GUgGUCCguAUGuu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 116369 0.69 0.987345
Target:  5'- gGAGGGGGCGCUgAGGCcucACAu -3'
miRNA:   3'- aUUCCCCUGUGG-UCCGua-UGUu -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 129782 0.69 0.988976
Target:  5'- --uGGGGcCACUgucaaGGGCAUGCAAu -3'
miRNA:   3'- auuCCCCuGUGG-----UCCGUAUGUU- -5'
MIMAT0003716 ebv-miR-BART17-3p -47.1 NC_007605.1 - 155330 0.69 0.988976
Target:  5'- aGGGGaGGAgGCCGGGCGcUAUAGg -3'
miRNA:   3'- aUUCC-CCUgUGGUCCGU-AUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.