miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10290 3' -58.1 NC_002687.1 + 102895 0.66 0.946431
Target:  5'- uCGCuguuGCUGUUGCUGCUguugUUGUUGCUGc -3'
miRNA:   3'- -GUGu---CGACGAUGGCGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 331443 0.66 0.946431
Target:  5'- aGCAGCUGUcuCUGCUUCUGUauCCGu -3'
miRNA:   3'- gUGUCGACGauGGCGAAGGCGacGGC- -5'
10290 3' -58.1 NC_002687.1 + 8284 0.66 0.946431
Target:  5'- gCGCAGCUGUcggaUGCUGCUggcgggcaCCGUUuucccGCCGg -3'
miRNA:   3'- -GUGUCGACG----AUGGCGAa-------GGCGA-----CGGC- -5'
10290 3' -58.1 NC_002687.1 + 158803 0.66 0.942197
Target:  5'- gCACGGCgGCgacaacgacggACCGCcgUCGCcGCCGg -3'
miRNA:   3'- -GUGUCGaCGa----------UGGCGaaGGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 210387 0.66 0.937751
Target:  5'- uGCAGCUGCaccACUGCca-CGaCUGCCa -3'
miRNA:   3'- gUGUCGACGa--UGGCGaagGC-GACGGc -5'
10290 3' -58.1 NC_002687.1 + 304219 0.66 0.937751
Target:  5'- nUACGGUUGCU-CCggggGCUaggcCCGCUGCUGu -3'
miRNA:   3'- -GUGUCGACGAuGG----CGAa---GGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 291382 0.66 0.934982
Target:  5'- gGCAGCUGCuUuuguguuuuuuuauuGCCGC--CCGC-GCCGg -3'
miRNA:   3'- gUGUCGACG-A---------------UGGCGaaGGCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 319287 0.66 0.933092
Target:  5'- aCAUAGCUGCgUGCC-CUUCCGa--CCGc -3'
miRNA:   3'- -GUGUCGACG-AUGGcGAAGGCgacGGC- -5'
10290 3' -58.1 NC_002687.1 + 279370 0.66 0.933092
Target:  5'- uGCAGCUGacgcuggagUGCCGUccggUUCCaCUGCCGc -3'
miRNA:   3'- gUGUCGACg--------AUGGCG----AAGGcGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 298278 0.66 0.933092
Target:  5'- gACGGUUGUUGCgUGCggCUGgaGCCGa -3'
miRNA:   3'- gUGUCGACGAUG-GCGaaGGCgaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 22995 0.66 0.92822
Target:  5'- uGCGGUUGCUucaACCGCgucCCGUgagcGCCu -3'
miRNA:   3'- gUGUCGACGA---UGGCGaa-GGCGa---CGGc -5'
10290 3' -58.1 NC_002687.1 + 270393 0.66 0.92822
Target:  5'- -cCAGCUGCUgcauacaauccACCGUUUCCgGCaGCgGg -3'
miRNA:   3'- guGUCGACGA-----------UGGCGAAGG-CGaCGgC- -5'
10290 3' -58.1 NC_002687.1 + 276333 0.66 0.927721
Target:  5'- aCACAGCaUGa-ACCGCgUCCacuugcaucagcaGCUGCCGc -3'
miRNA:   3'- -GUGUCG-ACgaUGGCGaAGG-------------CGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 25417 0.66 0.926716
Target:  5'- gCACGGCggUGCaggagUACCGCUacgacggcguacacUCCGCggaugugGCCGu -3'
miRNA:   3'- -GUGUCG--ACG-----AUGGCGA--------------AGGCGa------CGGC- -5'
10290 3' -58.1 NC_002687.1 + 77734 0.67 0.917832
Target:  5'- --uGGgUGCUGCCGUUUCagaCGCcGCCGc -3'
miRNA:   3'- gugUCgACGAUGGCGAAG---GCGaCGGC- -5'
10290 3' -58.1 NC_002687.1 + 296066 0.67 0.912317
Target:  5'- gCACGGCaucaGCc-CCGCUgcUCCGCUGCa- -3'
miRNA:   3'- -GUGUCGa---CGauGGCGA--AGGCGACGgc -5'
10290 3' -58.1 NC_002687.1 + 304249 0.67 0.90659
Target:  5'- uCGCAGCUcagagcGCUACUGCUgCUGCaGCUa -3'
miRNA:   3'- -GUGUCGA------CGAUGGCGAaGGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 10686 0.67 0.90659
Target:  5'- cCACAaCUGCcGCCGCcacugCCGCcGCCa -3'
miRNA:   3'- -GUGUcGACGaUGGCGaa---GGCGaCGGc -5'
10290 3' -58.1 NC_002687.1 + 126341 0.67 0.90659
Target:  5'- uGCAGCUGC-ACC-CU--CGCUGCUGa -3'
miRNA:   3'- gUGUCGACGaUGGcGAagGCGACGGC- -5'
10290 3' -58.1 NC_002687.1 + 283306 0.67 0.900653
Target:  5'- ---uGCUGUUGCUGUUcCUGCUGCUGc -3'
miRNA:   3'- guguCGACGAUGGCGAaGGCGACGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.