miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10297 5' -48.6 NC_002687.1 + 20336 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 170999 0.66 0.999978
Target:  5'- gGACGAGacGCCGCu-CUUCGUCGCgugCAa -3'
miRNA:   3'- -UUGCUU--UGGUGuuGGAGUAGUGa--GUg -5'
10297 5' -48.6 NC_002687.1 + 196171 0.66 0.999978
Target:  5'- cGACGAAGCUcuACAACCuggcggagaagaUCAUCACaaACu -3'
miRNA:   3'- -UUGCUUUGG--UGUUGG------------AGUAGUGagUG- -5'
10297 5' -48.6 NC_002687.1 + 157751 0.66 0.999978
Target:  5'- aGACGAAggacuucacGCCACGGCUUCcgUuCUCAUc -3'
miRNA:   3'- -UUGCUU---------UGGUGUUGGAGuaGuGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 300578 0.66 0.99997
Target:  5'- aAGCGguACCAacgguGCCUCAUCGCg--- -3'
miRNA:   3'- -UUGCuuUGGUgu---UGGAGUAGUGagug -5'
10297 5' -48.6 NC_002687.1 + 3051 0.66 0.99996
Target:  5'- cGGCGAuguaCAUAGCCguugaucCGUCGCUCAUg -3'
miRNA:   3'- -UUGCUuug-GUGUUGGa------GUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 284076 0.66 0.999947
Target:  5'- --gGAAACCACcggaUUgAUCGCUCACg -3'
miRNA:   3'- uugCUUUGGUGuug-GAgUAGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 81820 0.66 0.999947
Target:  5'- uGACGAGgcgGCCAC-ACUUCGUgCugUCAUc -3'
miRNA:   3'- -UUGCUU---UGGUGuUGGAGUA-GugAGUG- -5'
10297 5' -48.6 NC_002687.1 + 234097 0.66 0.999945
Target:  5'- gAACGAcACCGCAAUuaUUCGUCGCaaggagcaggagaUCGCg -3'
miRNA:   3'- -UUGCUuUGGUGUUG--GAGUAGUG-------------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 292655 0.67 0.999937
Target:  5'- cACGAAagcgGCCGCGGCgUUCGuuugauguaccacauUCGCUCGCg -3'
miRNA:   3'- uUGCUU----UGGUGUUG-GAGU---------------AGUGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 29482 0.67 0.999937
Target:  5'- uAACGGcauucgcuguccgguGAUCACAGCCUCcgCaaacuGCUCGCc -3'
miRNA:   3'- -UUGCU---------------UUGGUGUUGGAGuaG-----UGAGUG- -5'
10297 5' -48.6 NC_002687.1 + 248255 0.67 0.99993
Target:  5'- -cUGGAACC-CAACUUCGUCGaUCAUg -3'
miRNA:   3'- uuGCUUUGGuGUUGGAGUAGUgAGUG- -5'
10297 5' -48.6 NC_002687.1 + 262722 0.67 0.999926
Target:  5'- -cCGAGACCACAAUCUaccagacgaucgAUCGCgagCACg -3'
miRNA:   3'- uuGCUUUGGUGUUGGAg-----------UAGUGa--GUG- -5'
10297 5' -48.6 NC_002687.1 + 72242 0.67 0.999909
Target:  5'- aGGCGAcGGCCACggUCguagCGUCugUCAg -3'
miRNA:   3'- -UUGCU-UUGGUGuuGGa---GUAGugAGUg -5'
10297 5' -48.6 NC_002687.1 + 223021 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 262837 0.67 0.999882
Target:  5'- cAACGAGACCAUcuACUUCaAUCACgccaaaaucuUCACa -3'
miRNA:   3'- -UUGCUUUGGUGu-UGGAG-UAGUG----------AGUG- -5'
10297 5' -48.6 NC_002687.1 + 197430 0.67 0.999882
Target:  5'- --gGAGGCCACGuGCCUCAUU-CUCGg -3'
miRNA:   3'- uugCUUUGGUGU-UGGAGUAGuGAGUg -5'
10297 5' -48.6 NC_002687.1 + 94519 0.67 0.999882
Target:  5'- cGAUGAAGCCAUcGCCacCGUCACUguaGCa -3'
miRNA:   3'- -UUGCUUUGGUGuUGGa-GUAGUGAg--UG- -5'
10297 5' -48.6 NC_002687.1 + 218072 0.67 0.999848
Target:  5'- aAGCGAuacGCCGCaAACCUCucuuUCAUcCACg -3'
miRNA:   3'- -UUGCUu--UGGUG-UUGGAGu---AGUGaGUG- -5'
10297 5' -48.6 NC_002687.1 + 212648 0.67 0.999806
Target:  5'- -uCGAcGCCGCAAUCUC--CACUCAa -3'
miRNA:   3'- uuGCUuUGGUGUUGGAGuaGUGAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.