miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10301 3' -44.3 NC_002687.1 + 253521 0.66 1
Target:  5'- uCUUGGCGAgGUCGAGga-GGuCACAauUCg -3'
miRNA:   3'- -GAAUCGUUgUAGUUCaugCU-GUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 69222 0.68 1
Target:  5'- -gUGGCAGCAUUGGuGUugGuACACAagUCg -3'
miRNA:   3'- gaAUCGUUGUAGUU-CAugC-UGUGU--AG- -5'
10301 3' -44.3 NC_002687.1 + 97973 0.68 1
Target:  5'- --cGGC-ACGUCAucacuGUACGGCGuCAUCc -3'
miRNA:   3'- gaaUCGuUGUAGUu----CAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 20447 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 196282 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 221873 0.68 1
Target:  5'- --cGGCAACGUCGAcgcGUGCaACACAc- -3'
miRNA:   3'- gaaUCGUUGUAGUU---CAUGcUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 103759 0.68 1
Target:  5'- cCUUGGCGaagGCAUCGAgGUACaggucgGACACAa- -3'
miRNA:   3'- -GAAUCGU---UGUAGUU-CAUG------CUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 278589 0.69 1
Target:  5'- gUUAGCcuACGUCAAcgACGAUAUGUCa -3'
miRNA:   3'- gAAUCGu-UGUAGUUcaUGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 219339 0.69 1
Target:  5'- ---cGC-ACAcCAGGUACGAUACAUa -3'
miRNA:   3'- gaauCGuUGUaGUUCAUGCUGUGUAg -5'
10301 3' -44.3 NC_002687.1 + 66768 0.68 1
Target:  5'- -gUAGguAUGUCAAGUGCgGGgAUAUCg -3'
miRNA:   3'- gaAUCguUGUAGUUCAUG-CUgUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 4349 0.67 1
Target:  5'- aUUGGUAGCGUCG-----GACACGUCa -3'
miRNA:   3'- gAAUCGUUGUAGUucaugCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 71939 0.67 1
Target:  5'- --gGGgAGCGUCAGGUACuGACcagaacuCAUCg -3'
miRNA:   3'- gaaUCgUUGUAGUUCAUG-CUGu------GUAG- -5'
10301 3' -44.3 NC_002687.1 + 249328 0.66 1
Target:  5'- -cUGGCGguggacucaaaGCAUCGaaggaggGGUACGAUAcCAUCa -3'
miRNA:   3'- gaAUCGU-----------UGUAGU-------UCAUGCUGU-GUAG- -5'
10301 3' -44.3 NC_002687.1 + 119824 0.66 1
Target:  5'- --cAGCGACAcCAucacCGACGCGUCu -3'
miRNA:   3'- gaaUCGUUGUaGUucauGCUGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 240017 0.67 1
Target:  5'- gCUUAGCGGgAUCuuuGAGcACGucguACACAUCg -3'
miRNA:   3'- -GAAUCGUUgUAG---UUCaUGC----UGUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 72513 0.67 1
Target:  5'- uCUUGGCAucGCuAUCAA--GCGGCACAg- -3'
miRNA:   3'- -GAAUCGU--UG-UAGUUcaUGCUGUGUag -5'
10301 3' -44.3 NC_002687.1 + 268464 0.67 1
Target:  5'- --cAGCAGCugGUCGcggAGUACGugagcCACGUCa -3'
miRNA:   3'- gaaUCGUUG--UAGU---UCAUGCu----GUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 59041 0.67 1
Target:  5'- -aUAGCAACaAUCA---GCGugAUAUCa -3'
miRNA:   3'- gaAUCGUUG-UAGUucaUGCugUGUAG- -5'
10301 3' -44.3 NC_002687.1 + 34738 0.67 1
Target:  5'- gCUUAGCcauuGCGUCAuacaauaGGUuaGCGGCgGCGUCa -3'
miRNA:   3'- -GAAUCGu---UGUAGU-------UCA--UGCUG-UGUAG- -5'
10301 3' -44.3 NC_002687.1 + 32410 0.67 1
Target:  5'- --gGGCGcggucGCuuUCAGGUGCGACACuugCg -3'
miRNA:   3'- gaaUCGU-----UGu-AGUUCAUGCUGUGua-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.