miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10304 5' -50.5 NC_002687.1 + 146240 0.66 0.999646
Target:  5'- cUGUGUGGUggugaUGAGguacUCGUGCUGCAc -3'
miRNA:   3'- -ACACGUCGagug-AUUU----AGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 52758 0.66 0.999559
Target:  5'- gUGUGUAGCUCACUAAGgggacaaaaggUGUGggGaCAa -3'
miRNA:   3'- -ACACGUCGAGUGAUUUa----------GCACgaC-GU- -5'
10304 5' -50.5 NC_002687.1 + 129142 0.66 0.999454
Target:  5'- gGUGUGGCUCACgu-AUCcuUGCUGgAu -3'
miRNA:   3'- aCACGUCGAGUGauuUAGc-ACGACgU- -5'
10304 5' -50.5 NC_002687.1 + 281154 0.66 0.999454
Target:  5'- uUGUGCAcCguaagCACUAGAU--UGCUGCAc -3'
miRNA:   3'- -ACACGUcGa----GUGAUUUAgcACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 231295 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 231051 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 230929 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229960 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 229838 0.66 0.999454
Target:  5'- --gGUAGCaCGgUGAGaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 311873 0.66 0.999178
Target:  5'- --cGCcGCUCGCUuccguuGUCGUGUgagGCAg -3'
miRNA:   3'- acaCGuCGAGUGAuu----UAGCACGa--CGU- -5'
10304 5' -50.5 NC_002687.1 + 231173 0.67 0.998999
Target:  5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 230324 0.67 0.998999
Target:  5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 231417 0.67 0.998999
Target:  5'- --gGUAGCaCGgUGAAaCGUGCUGCAu -3'
miRNA:   3'- acaCGUCGaGUgAUUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 257352 0.67 0.998999
Target:  5'- gUGUGCAGCaUCGCcgcGAUCGcGaUUGCAg -3'
miRNA:   3'- -ACACGUCG-AGUGau-UUAGCaC-GACGU- -5'
10304 5' -50.5 NC_002687.1 + 230566 0.67 0.998999
Target:  5'- --gGUAGCaCGCUGAggCGUGCUGgAu -3'
miRNA:   3'- acaCGUCGaGUGAUUuaGCACGACgU- -5'
10304 5' -50.5 NC_002687.1 + 230812 0.67 0.998999
Target:  5'- -aUGCAGgUaCACggugAGA-CGUGCUGCAu -3'
miRNA:   3'- acACGUCgA-GUGa---UUUaGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 139203 0.67 0.998789
Target:  5'- aUGUGguGCUgACaaucaucAAGUCGUGUauUGCAu -3'
miRNA:   3'- -ACACguCGAgUGa------UUUAGCACG--ACGU- -5'
10304 5' -50.5 NC_002687.1 + 328694 0.68 0.997086
Target:  5'- -uUGCucuCUCACUucgcacUCGUGCUGCAu -3'
miRNA:   3'- acACGuc-GAGUGAuuu---AGCACGACGU- -5'
10304 5' -50.5 NC_002687.1 + 310980 0.68 0.997086
Target:  5'- cGUGCAGCUUACagGGggCGUGaaaccgUGCAg -3'
miRNA:   3'- aCACGUCGAGUGa-UUuaGCACg-----ACGU- -5'
10304 5' -50.5 NC_002687.1 + 51121 0.7 0.989294
Target:  5'- gGUGCAGcCUUagACgugcGUCGUGCUGUg -3'
miRNA:   3'- aCACGUC-GAG--UGauu-UAGCACGACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.