miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10306 5' -50.5 NC_002687.1 + 291563 0.66 0.999743
Target:  5'- aUGCCcaccucacGcGAUGCCuGAAGGCCAAGAg--- -3'
miRNA:   3'- -ACGG--------C-CUACGG-CUUUCGGUUUUgaag -5'
10306 5' -50.5 NC_002687.1 + 181057 0.66 0.999743
Target:  5'- aGCC-GAUGCagcucguucaCGAAGGCCGAGAgUUg -3'
miRNA:   3'- aCGGcCUACG----------GCUUUCGGUUUUgAAg -5'
10306 5' -50.5 NC_002687.1 + 4246 0.66 0.999743
Target:  5'- gGCCGcGGUGCCuaGAAGcGCCGAGuCUa- -3'
miRNA:   3'- aCGGC-CUACGG--CUUU-CGGUUUuGAag -5'
10306 5' -50.5 NC_002687.1 + 277131 0.66 0.999743
Target:  5'- aGCCGGGUcGuCCGAuGGCCGccGACg-- -3'
miRNA:   3'- aCGGCCUA-C-GGCUuUCGGUu-UUGaag -5'
10306 5' -50.5 NC_002687.1 + 146024 0.66 0.999677
Target:  5'- cGCCaGggGCCGGAAGCUGAc-CUUg -3'
miRNA:   3'- aCGGcCuaCGGCUUUCGGUUuuGAAg -5'
10306 5' -50.5 NC_002687.1 + 226959 0.66 0.999598
Target:  5'- cUGCCGGuggugGUGUCGguGGCUccGAAACUg- -3'
miRNA:   3'- -ACGGCC-----UACGGCuuUCGG--UUUUGAag -5'
10306 5' -50.5 NC_002687.1 + 205962 0.66 0.999598
Target:  5'- aGCgGGAUGUacggGAGAGCCGuGAACa-- -3'
miRNA:   3'- aCGgCCUACGg---CUUUCGGU-UUUGaag -5'
10306 5' -50.5 NC_002687.1 + 170443 0.66 0.999598
Target:  5'- aGCUcGAUGuCCGAcAGCCcGGugUUCg -3'
miRNA:   3'- aCGGcCUAC-GGCUuUCGGuUUugAAG- -5'
10306 5' -50.5 NC_002687.1 + 316035 0.66 0.999598
Target:  5'- gUGCCGauGGUGCCGAugguGCCGguggGGACg-- -3'
miRNA:   3'- -ACGGC--CUACGGCUuu--CGGU----UUUGaag -5'
10306 5' -50.5 NC_002687.1 + 31161 0.66 0.999502
Target:  5'- cGCCGG-UGCCGAu-GUgAAGGCa-- -3'
miRNA:   3'- aCGGCCuACGGCUuuCGgUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 304468 0.66 0.999502
Target:  5'- gUGCCGGAc-CCGAuacGGUCAcacuauuuaAAACUUCg -3'
miRNA:   3'- -ACGGCCUacGGCUu--UCGGU---------UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 18336 0.66 0.999502
Target:  5'- -aCCGGccGUCGAAGGCCGguaucGGACaUUCa -3'
miRNA:   3'- acGGCCuaCGGCUUUCGGU-----UUUG-AAG- -5'
10306 5' -50.5 NC_002687.1 + 41233 0.66 0.999502
Target:  5'- cGCaCGGAaagUGgCGGGAGCgGguAGGCUUCg -3'
miRNA:   3'- aCG-GCCU---ACgGCUUUCGgU--UUUGAAG- -5'
10306 5' -50.5 NC_002687.1 + 32309 0.66 0.999502
Target:  5'- aGCCGaGUGUaCGGAAGuCCAGAGCg-- -3'
miRNA:   3'- aCGGCcUACG-GCUUUC-GGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 103676 0.66 0.999386
Target:  5'- uUGCCGG-UGgCGAAAGCUuucuGGGCg-- -3'
miRNA:   3'- -ACGGCCuACgGCUUUCGGu---UUUGaag -5'
10306 5' -50.5 NC_002687.1 + 226397 0.66 0.999386
Target:  5'- aGCCGGAcagggggguggUGUgGgcGGCCGGGACg-- -3'
miRNA:   3'- aCGGCCU-----------ACGgCuuUCGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 225839 0.66 0.999386
Target:  5'- aGCCGGAgagggggguggUGUgGgcGGCCGGGACg-- -3'
miRNA:   3'- aCGGCCU-----------ACGgCuuUCGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 269770 0.66 0.999386
Target:  5'- cGCCGGAUGCCac---CCGAAAUa-- -3'
miRNA:   3'- aCGGCCUACGGcuuucGGUUUUGaag -5'
10306 5' -50.5 NC_002687.1 + 30593 0.66 0.999386
Target:  5'- gGCCGGGggguUGCCGAGgacAGUCAAcguGGCg-- -3'
miRNA:   3'- aCGGCCU----ACGGCUU---UCGGUU---UUGaag -5'
10306 5' -50.5 NC_002687.1 + 226025 0.66 0.999386
Target:  5'- aGCCGGAgagggggguggUGUgGgcGGCCGGGACg-- -3'
miRNA:   3'- aCGGCCU-----------ACGgCuuUCGGUUUUGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.