miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 3' -56.6 NC_002687.1 + 57711 0.66 0.976343
Target:  5'- uUGAAAcCAUUcGGCGGCgcacggacACCGCCcGCGa -3'
miRNA:   3'- gACUUU-GUGA-CCGCCG--------UGGCGGcUGU- -5'
10310 3' -56.6 NC_002687.1 + 60181 0.66 0.976343
Target:  5'- aUGGAACAC-GGCGG-ACUGCCa--- -3'
miRNA:   3'- gACUUUGUGaCCGCCgUGGCGGcugu -5'
10310 3' -56.6 NC_002687.1 + 262130 0.66 0.976343
Target:  5'- -gGAAGCACgGGaaGCA-CGCCGAUAu -3'
miRNA:   3'- gaCUUUGUGaCCgcCGUgGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 97790 0.66 0.971317
Target:  5'- gCUGGcacCGCUGGCccaccGGCACCaUCGGCAc -3'
miRNA:   3'- -GACUuu-GUGACCG-----CCGUGGcGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 85713 0.66 0.971317
Target:  5'- gCUGGcccCACUGGCcccgcuGGCcCCGCUGGCc -3'
miRNA:   3'- -GACUuu-GUGACCG------CCGuGGCGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 330559 0.66 0.971317
Target:  5'- aUGGAGuggUGgUGGCGuGCACaUGCCGGCAg -3'
miRNA:   3'- gACUUU---GUgACCGC-CGUG-GCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 21848 0.66 0.971047
Target:  5'- ----cACGCUGGCGGCGggggaacCUGUgGACAu -3'
miRNA:   3'- gacuuUGUGACCGCCGU-------GGCGgCUGU- -5'
10310 3' -56.6 NC_002687.1 + 207460 0.66 0.968535
Target:  5'- -aGAAACA--GGCGGCACa-UCGACAa -3'
miRNA:   3'- gaCUUUGUgaCCGCCGUGgcGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 68412 0.66 0.968535
Target:  5'- -cGAAACccugaUGGUGGCACCcgguGCCGuCAc -3'
miRNA:   3'- gaCUUUGug---ACCGCCGUGG----CGGCuGU- -5'
10310 3' -56.6 NC_002687.1 + 135590 0.66 0.968535
Target:  5'- -gGGGACAuCUGGCaGGCAUUGCCcucGCGa -3'
miRNA:   3'- gaCUUUGU-GACCG-CCGUGGCGGc--UGU- -5'
10310 3' -56.6 NC_002687.1 + 200344 0.66 0.962406
Target:  5'- -cGAcgUGCUGGCGGCAgccuUCGCaGACGu -3'
miRNA:   3'- gaCUuuGUGACCGCCGU----GGCGgCUGU- -5'
10310 3' -56.6 NC_002687.1 + 83575 0.66 0.962406
Target:  5'- uUGAGAUugUaGGUGGCgACgGCgCGACGc -3'
miRNA:   3'- gACUUUGugA-CCGCCG-UGgCG-GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 150721 0.66 0.962406
Target:  5'- -aGAAGCACUGGUuucucucccggaGGCuuccucccACCGuuGGCGu -3'
miRNA:   3'- gaCUUUGUGACCG------------CCG--------UGGCggCUGU- -5'
10310 3' -56.6 NC_002687.1 + 226496 0.67 0.95905
Target:  5'- --cGGACugUucGGUGGCGCCGCUGGg- -3'
miRNA:   3'- gacUUUGugA--CCGCCGUGGCGGCUgu -5'
10310 3' -56.6 NC_002687.1 + 279536 0.67 0.95905
Target:  5'- --cAAACGCUucCGGCACCGCCGcuGCGc -3'
miRNA:   3'- gacUUUGUGAccGCCGUGGCGGC--UGU- -5'
10310 3' -56.6 NC_002687.1 + 283597 0.67 0.95905
Target:  5'- gUGAAGCGCUugGGCuGUACCaGCUGAUu -3'
miRNA:   3'- gACUUUGUGA--CCGcCGUGG-CGGCUGu -5'
10310 3' -56.6 NC_002687.1 + 155183 0.67 0.95905
Target:  5'- -gGAGAUGCUaacaccaaaGGCACUGCCGACGa -3'
miRNA:   3'- gaCUUUGUGAccg------CCGUGGCGGCUGU- -5'
10310 3' -56.6 NC_002687.1 + 119130 0.67 0.95694
Target:  5'- uCUGAcACGgaGGCuguguugucguucuuGGCGCCGuCCGACc -3'
miRNA:   3'- -GACUuUGUgaCCG---------------CCGUGGC-GGCUGu -5'
10310 3' -56.6 NC_002687.1 + 249621 0.67 0.955858
Target:  5'- aUGAAGCACcguccaugugggcugGGCguucaGGCACUGCaCGACGu -3'
miRNA:   3'- gACUUUGUGa--------------CCG-----CCGUGGCG-GCUGU- -5'
10310 3' -56.6 NC_002687.1 + 300221 0.67 0.955493
Target:  5'- aUGAGGCACcguUGGUaccgcuucCACCGCCGACu -3'
miRNA:   3'- gACUUUGUG---ACCGcc------GUGGCGGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.