miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10310 5' -56 NC_002687.1 + 210286 0.66 0.985606
Target:  5'- cACCGCCaccacgggcaccacuGCCACCAcUGCCAcUAcgGGc -3'
miRNA:   3'- -UGGCGG---------------CGGUGGUaGCGGUuGUaaCC- -5'
10310 5' -56 NC_002687.1 + 204741 0.66 0.984951
Target:  5'- uCCgGCCGCUACgguggaugucaCAUCGCCGuGCAUgUGGu -3'
miRNA:   3'- uGG-CGGCGGUG-----------GUAGCGGU-UGUA-ACC- -5'
10310 5' -56 NC_002687.1 + 98850 0.66 0.984951
Target:  5'- cCCGCCGCgugggagccaaCACCAUCcCCGACcuUUGa -3'
miRNA:   3'- uGGCGGCG-----------GUGGUAGcGGUUGu-AACc -5'
10310 5' -56 NC_002687.1 + 237594 0.66 0.984951
Target:  5'- cACCGCCGUCAUUGaCGaCCGA-AUUGGu -3'
miRNA:   3'- -UGGCGGCGGUGGUaGC-GGUUgUAACC- -5'
10310 5' -56 NC_002687.1 + 93672 0.66 0.984951
Target:  5'- aACCGCCGUCAUCGgcguaaUCGCCcgg---GGa -3'
miRNA:   3'- -UGGCGGCGGUGGU------AGCGGuuguaaCC- -5'
10310 5' -56 NC_002687.1 + 18119 0.66 0.984951
Target:  5'- aGCCGCUGCggCugCAaCGCuUAGCAUUGa -3'
miRNA:   3'- -UGGCGGCG--GugGUaGCG-GUUGUAACc -5'
10310 5' -56 NC_002687.1 + 93000 0.66 0.984951
Target:  5'- aGCCuUCGaCCAUgGUCGCCAACAa--- -3'
miRNA:   3'- -UGGcGGC-GGUGgUAGCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 22197 0.66 0.984951
Target:  5'- cCCGCCGCCAgCGUgugCGCacgaAGCAUg-- -3'
miRNA:   3'- uGGCGGCGGUgGUA---GCGg---UUGUAacc -5'
10310 5' -56 NC_002687.1 + 69180 0.66 0.983214
Target:  5'- uACUGCUGUUGCgCGagcUUGCCGACAUcaUGGg -3'
miRNA:   3'- -UGGCGGCGGUG-GU---AGCGGUUGUA--ACC- -5'
10310 5' -56 NC_002687.1 + 224853 0.66 0.983214
Target:  5'- aGCCGCCGaCGCgGcggCGCCGGCAc--- -3'
miRNA:   3'- -UGGCGGCgGUGgUa--GCGGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 126184 0.66 0.983214
Target:  5'- uGCCcCCGCCACCGgUCG-CGACAg--- -3'
miRNA:   3'- -UGGcGGCGGUGGU-AGCgGUUGUaacc -5'
10310 5' -56 NC_002687.1 + 29029 0.66 0.983214
Target:  5'- gAUCGCUGCCAUugcaagcaCGUCGuCCAGCAaUGcGg -3'
miRNA:   3'- -UGGCGGCGGUG--------GUAGC-GGUUGUaAC-C- -5'
10310 5' -56 NC_002687.1 + 321526 0.66 0.983214
Target:  5'- uGCCGCaaGUCGCaaacaGUCGCCGggACAUUGu -3'
miRNA:   3'- -UGGCGg-CGGUGg----UAGCGGU--UGUAACc -5'
10310 5' -56 NC_002687.1 + 277506 0.66 0.983214
Target:  5'- cCCGCgCGCUGCC-UCGUCGGCGgccaucGGa -3'
miRNA:   3'- uGGCG-GCGGUGGuAGCGGUUGUaa----CC- -5'
10310 5' -56 NC_002687.1 + 10531 0.66 0.983214
Target:  5'- gACCGCgGCCACauacagcaUAUCGCaAACGgugcUGGg -3'
miRNA:   3'- -UGGCGgCGGUG--------GUAGCGgUUGUa---ACC- -5'
10310 5' -56 NC_002687.1 + 239710 0.66 0.983032
Target:  5'- -aCGCCGCCagacaaggucaggGCCGUgGCCAACc---- -3'
miRNA:   3'- ugGCGGCGG-------------UGGUAgCGGUUGuaacc -5'
10310 5' -56 NC_002687.1 + 317741 0.66 0.98133
Target:  5'- gACCGCCuGCUACUggUGCCAAUucUGu -3'
miRNA:   3'- -UGGCGG-CGGUGGuaGCGGUUGuaACc -5'
10310 5' -56 NC_002687.1 + 260902 0.66 0.98133
Target:  5'- aGCCGCUGCCGCCGUCaagaggguccCCAAUc---- -3'
miRNA:   3'- -UGGCGGCGGUGGUAGc---------GGUUGuaacc -5'
10310 5' -56 NC_002687.1 + 85035 0.66 0.98133
Target:  5'- uCCGCUGCU-CCGUCGCCucCAUc-- -3'
miRNA:   3'- uGGCGGCGGuGGUAGCGGuuGUAacc -5'
10310 5' -56 NC_002687.1 + 239843 0.66 0.98133
Target:  5'- gGCCGCCGCgGCgGaUGCUGGCAagaGGa -3'
miRNA:   3'- -UGGCGGCGgUGgUaGCGGUUGUaa-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.