miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10313 3' -57.1 NC_002687.1 + 120472 0.66 0.960211
Target:  5'- cAACGGCAGUAUCUuuGCCCaaaaaGUugACCAg -3'
miRNA:   3'- uUUGCCGUCGUGGGuuUGGG-----CG--UGGU- -5'
10313 3' -57.1 NC_002687.1 + 145455 0.66 0.960211
Target:  5'- uGugGGaggagcugaccCAGCGCCCcGGCgCGCGCCu -3'
miRNA:   3'- uUugCC-----------GUCGUGGGuUUGgGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 310931 0.66 0.960211
Target:  5'- aGAACGGCGGUugCgGcgcGCCaCGCACg- -3'
miRNA:   3'- -UUUGCCGUCGugGgUu--UGG-GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 96945 0.66 0.959867
Target:  5'- gAAACGGCGuCGgUCGAugucgagGCCUGCACCGg -3'
miRNA:   3'- -UUUGCCGUcGUgGGUU-------UGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 131740 0.66 0.956682
Target:  5'- ---gGGCAucgacaauGCGCCCGGGCCuCGCAUg- -3'
miRNA:   3'- uuugCCGU--------CGUGGGUUUGG-GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 209477 0.66 0.956682
Target:  5'- --cCGGUugaagAGUACCUccACUCGCGCCAg -3'
miRNA:   3'- uuuGCCG-----UCGUGGGuuUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 283925 0.66 0.956682
Target:  5'- cAGCGGCGGCuguagauuccCCUAGACCUGCGu-- -3'
miRNA:   3'- uUUGCCGUCGu---------GGGUUUGGGCGUggu -5'
10313 3' -57.1 NC_002687.1 + 57858 0.66 0.956682
Target:  5'- gGGACGGCuuGUugCauu-CCCGCGCUAa -3'
miRNA:   3'- -UUUGCCGu-CGugGguuuGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 41985 0.66 0.952944
Target:  5'- cGAACGGuUGGCACCguccgCGAACuCCGCgaGCCAc -3'
miRNA:   3'- -UUUGCC-GUCGUGG-----GUUUG-GGCG--UGGU- -5'
10313 3' -57.1 NC_002687.1 + 214891 0.66 0.952944
Target:  5'- --cCGGCAGagauggagcCACCgAuuGACCCGCugCAc -3'
miRNA:   3'- uuuGCCGUC---------GUGGgU--UUGGGCGugGU- -5'
10313 3' -57.1 NC_002687.1 + 239094 0.66 0.952944
Target:  5'- cAGAUGGCGGC-Cau-GAUCCGUGCCAa -3'
miRNA:   3'- -UUUGCCGUCGuGgguUUGGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 291539 0.66 0.952944
Target:  5'- ---aGGCcaagAGCACCCGGACUcaCGCACa- -3'
miRNA:   3'- uuugCCG----UCGUGGGUUUGG--GCGUGgu -5'
10313 3' -57.1 NC_002687.1 + 10445 0.66 0.944834
Target:  5'- uAGCGGUAGCAucggcCUCGGGCCCGUugauGCUg -3'
miRNA:   3'- uUUGCCGUCGU-----GGGUUUGGGCG----UGGu -5'
10313 3' -57.1 NC_002687.1 + 281323 0.66 0.944834
Target:  5'- --cCGGCcGCcgcugccgccACCCAGGCCCcCGCCGa -3'
miRNA:   3'- uuuGCCGuCG----------UGGGUUUGGGcGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 163091 0.66 0.944406
Target:  5'- ---aGGCGGCuacaugaACuCCAGGCCgUGCGCCAa -3'
miRNA:   3'- uuugCCGUCG-------UG-GGUUUGG-GCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 316274 0.66 0.940456
Target:  5'- uGAUGGCGGUGgUgCAAugUCGCACCAg -3'
miRNA:   3'- uUUGCCGUCGUgG-GUUugGGCGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 282185 0.66 0.940006
Target:  5'- -uGCGGCGGCGgcuguuguuucCCCaAGACCUgcguuuuGCACCGg -3'
miRNA:   3'- uuUGCCGUCGU-----------GGG-UUUGGG-------CGUGGU- -5'
10313 3' -57.1 NC_002687.1 + 4805 0.67 0.935859
Target:  5'- -uACGuCGGCuCCCuguGCCCGCACUg -3'
miRNA:   3'- uuUGCcGUCGuGGGuu-UGGGCGUGGu -5'
10313 3' -57.1 NC_002687.1 + 301785 0.67 0.935859
Target:  5'- -cACGaCAGCACCCG-ACUCGaCGCCu -3'
miRNA:   3'- uuUGCcGUCGUGGGUuUGGGC-GUGGu -5'
10313 3' -57.1 NC_002687.1 + 233125 0.67 0.930053
Target:  5'- uGACGGCAGCGCCUccauGGCCUccucgucuaacuCGCCAa -3'
miRNA:   3'- uUUGCCGUCGUGGGu---UUGGGc-----------GUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.