miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10318 3' -45.6 NC_002687.1 + 181341 0.66 1
Target:  5'- gUGAgagcGUCGaGCAUGUUCAGCGguuguuugaguucguGGUCGa -3'
miRNA:   3'- -ACUa---CAGCcUGUGCAAGUUGU---------------UUAGC- -5'
10318 3' -45.6 NC_002687.1 + 118752 0.66 1
Target:  5'- cGAcG-CGGAacCACGUUCGACGAccaGUCu -3'
miRNA:   3'- aCUaCaGCCU--GUGCAAGUUGUU---UAGc -5'
10318 3' -45.6 NC_002687.1 + 32458 0.67 1
Target:  5'- --uUGUCGGACACGUgacucuuUCuGACAGAa-- -3'
miRNA:   3'- acuACAGCCUGUGCA-------AG-UUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 171321 0.67 1
Target:  5'- aGAUGcaaauGAUuaagGCGUUCAACAAGUCGu -3'
miRNA:   3'- aCUACagc--CUG----UGCAAGUUGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 270909 0.67 1
Target:  5'- cUGuUGUCGGAUcuUGUUCGACAGAa-- -3'
miRNA:   3'- -ACuACAGCCUGu-GCAAGUUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 79144 0.66 1
Target:  5'- uUGAUGaaUCGGACGCGUacgcgguacagUgGACGcAGUCa -3'
miRNA:   3'- -ACUAC--AGCCUGUGCA-----------AgUUGU-UUAGc -5'
10318 3' -45.6 NC_002687.1 + 68816 0.67 1
Target:  5'- aUGAUGUCGGcaagcuCGCGcaaCAGCAGuauuUCGg -3'
miRNA:   3'- -ACUACAGCCu-----GUGCaa-GUUGUUu---AGC- -5'
10318 3' -45.6 NC_002687.1 + 319827 0.67 1
Target:  5'- uUGuUGUCGGACGCcuccUCGGCAAcgUGu -3'
miRNA:   3'- -ACuACAGCCUGUGca--AGUUGUUuaGC- -5'
10318 3' -45.6 NC_002687.1 + 256539 0.67 1
Target:  5'- -uGUGgaagUGGugACGUUCGGCGcucccaaGAUCGg -3'
miRNA:   3'- acUACa---GCCugUGCAAGUUGU-------UUAGC- -5'
10318 3' -45.6 NC_002687.1 + 81929 0.66 1
Target:  5'- aGAUG-CaGGACugGUUCAAuCGAAaCGu -3'
miRNA:   3'- aCUACaG-CCUGugCAAGUU-GUUUaGC- -5'
10318 3' -45.6 NC_002687.1 + 148553 0.68 1
Target:  5'- ----uUCGGACGCGccCGGCAAGUCc -3'
miRNA:   3'- acuacAGCCUGUGCaaGUUGUUUAGc -5'
10318 3' -45.6 NC_002687.1 + 319155 0.67 1
Target:  5'- gGAUGUUGGACGaGUUCAGgAcuUCc -3'
miRNA:   3'- aCUACAGCCUGUgCAAGUUgUuuAGc -5'
10318 3' -45.6 NC_002687.1 + 298942 0.66 1
Target:  5'- uUGAUGgaUCGGAgCGCGUUCugUAGGaCGg -3'
miRNA:   3'- -ACUAC--AGCCU-GUGCAAGuuGUUUaGC- -5'
10318 3' -45.6 NC_002687.1 + 86272 0.66 1
Target:  5'- cGAUGUaGGAgACGgacgUCAcuccgagcgaugACAGGUCGa -3'
miRNA:   3'- aCUACAgCCUgUGCa---AGU------------UGUUUAGC- -5'
10318 3' -45.6 NC_002687.1 + 55619 0.66 1
Target:  5'- ------gGGACACGUcgCGGCAAAUCu -3'
miRNA:   3'- acuacagCCUGUGCAa-GUUGUUUAGc -5'
10318 3' -45.6 NC_002687.1 + 309546 0.66 1
Target:  5'- uUGAUGUUGcGGCugGcggcUCAGCAccUCGa -3'
miRNA:   3'- -ACUACAGC-CUGugCa---AGUUGUuuAGC- -5'
10318 3' -45.6 NC_002687.1 + 208274 0.67 1
Target:  5'- gGGUaUUGGugAUGUUCAACAcgGGUCc -3'
miRNA:   3'- aCUAcAGCCugUGCAAGUUGU--UUAGc -5'
10318 3' -45.6 NC_002687.1 + 181672 0.67 1
Target:  5'- cGAUGU-GGACGCGcUCAcgACGAAagCGg -3'
miRNA:   3'- aCUACAgCCUGUGCaAGU--UGUUUa-GC- -5'
10318 3' -45.6 NC_002687.1 + 205173 0.67 1
Target:  5'- gGAuUGUCGGGCGCGUguUC-ACGAGa-- -3'
miRNA:   3'- aCU-ACAGCCUGUGCA--AGuUGUUUagc -5'
10318 3' -45.6 NC_002687.1 + 74807 0.67 1
Target:  5'- cGAUcucgCGGACACuUUCGACGAGUa- -3'
miRNA:   3'- aCUAca--GCCUGUGcAAGUUGUUUAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.