miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10321 5' -55.2 NC_002687.1 + 85728 0.66 0.988454
Target:  5'- gUCUGcgaaaGGCCggUGGCACCCgccGG-ACCg -3'
miRNA:   3'- -AGAC-----UUGGgaACCGUGGGaa-CCgUGG- -5'
10321 5' -55.2 NC_002687.1 + 307854 0.66 0.988454
Target:  5'- --aGuGCCCcugugUUGGCGCCCUcGGuCACUu -3'
miRNA:   3'- agaCuUGGG-----AACCGUGGGAaCC-GUGG- -5'
10321 5' -55.2 NC_002687.1 + 226496 0.66 0.988454
Target:  5'- --cGGACUgUucggUGGCGCCgCUgggacugaUGGCGCCg -3'
miRNA:   3'- agaCUUGGgA----ACCGUGG-GA--------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 37278 0.66 0.988454
Target:  5'- gUUGaAACCUgUGGC-CCCgaaUGGCGCa -3'
miRNA:   3'- aGAC-UUGGGaACCGuGGGa--ACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 128940 0.66 0.988454
Target:  5'- gUUUG-ACCCaUGGcCACuCUUUGGgACCg -3'
miRNA:   3'- -AGACuUGGGaACC-GUG-GGAACCgUGG- -5'
10321 5' -55.2 NC_002687.1 + 97749 0.66 0.986086
Target:  5'- gCUGAAgCgUUGGCGgCgUggauguucucguugcUGGCACCg -3'
miRNA:   3'- aGACUUgGgAACCGUgGgA---------------ACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 85296 0.66 0.985439
Target:  5'- cCUGGuCCCgUGGguCCCgUGGguCCc -3'
miRNA:   3'- aGACUuGGGaACCguGGGaACCguGG- -5'
10321 5' -55.2 NC_002687.1 + 209976 0.66 0.985439
Target:  5'- -gUGGugCagaUGGUGCCCgUGGUGCCg -3'
miRNA:   3'- agACUugGga-ACCGUGGGaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 279643 0.66 0.985439
Target:  5'- uUCUGGuggGCCggUGGUGCC---GGCACCa -3'
miRNA:   3'- -AGACU---UGGgaACCGUGGgaaCCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 85703 0.66 0.983723
Target:  5'- gUCUGGcCCCgcUGGC-CCCacUGGCcCCg -3'
miRNA:   3'- -AGACUuGGGa-ACCGuGGGa-ACCGuGG- -5'
10321 5' -55.2 NC_002687.1 + 8260 0.66 0.983723
Target:  5'- uUCUGuaaCCUUGGagUACCUaUGGCGCa -3'
miRNA:   3'- -AGACuugGGAACC--GUGGGaACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 99786 0.66 0.983723
Target:  5'- aUCauGGCCCUcaugaccGGCACCCacGGCACg -3'
miRNA:   3'- -AGacUUGGGAa------CCGUGGGaaCCGUGg -5'
10321 5' -55.2 NC_002687.1 + 313568 0.66 0.981858
Target:  5'- gCUGAACCaCUUGGCAggugcaUCCagUGGU-CCa -3'
miRNA:   3'- aGACUUGG-GAACCGU------GGGa-ACCGuGG- -5'
10321 5' -55.2 NC_002687.1 + 331763 0.66 0.981858
Target:  5'- aCUGAGCUCgaagaucccGCGCCgaUGGCACa -3'
miRNA:   3'- aGACUUGGGaac------CGUGGgaACCGUGg -5'
10321 5' -55.2 NC_002687.1 + 279138 0.67 0.979837
Target:  5'- --aGAGCaCCagUGGCACCUggGGCAg- -3'
miRNA:   3'- agaCUUG-GGa-ACCGUGGGaaCCGUgg -5'
10321 5' -55.2 NC_002687.1 + 18243 0.67 0.978547
Target:  5'- --cGGACUCUUGaaGCGCCgcugcggccgcaacgCUUGGCACUg -3'
miRNA:   3'- agaCUUGGGAAC--CGUGG---------------GAACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 126068 0.67 0.977653
Target:  5'- cUUGAGCCC--GGCACCaa-GGCucGCCu -3'
miRNA:   3'- aGACUUGGGaaCCGUGGgaaCCG--UGG- -5'
10321 5' -55.2 NC_002687.1 + 316038 0.67 0.977653
Target:  5'- -gUGGugCCgaUGGUGCCgaUGGUGCCg -3'
miRNA:   3'- agACUugGGa-ACCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 2860 0.67 0.9753
Target:  5'- --cGGuCUCgagGGCGCCgaUGGCGCCu -3'
miRNA:   3'- agaCUuGGGaa-CCGUGGgaACCGUGG- -5'
10321 5' -55.2 NC_002687.1 + 142811 0.67 0.9753
Target:  5'- aCUGGAUCCagUGGUGCCCUcuGUACg -3'
miRNA:   3'- aGACUUGGGa-ACCGUGGGAacCGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.