miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10342 5' -51.8 NC_002687.1 + 145851 0.66 0.999275
Target:  5'- cGCGAACuugccgaucuGCucGCCGAGgcGCGCgCCGg -3'
miRNA:   3'- -UGUUUGuu--------CGuuUGGCUCa-CGCG-GGC- -5'
10342 5' -51.8 NC_002687.1 + 170369 0.66 0.999275
Target:  5'- cACGAACcgGGGCAcgAACCGGGgcacgaaccgGCGCgCGa -3'
miRNA:   3'- -UGUUUG--UUCGU--UUGGCUCa---------CGCGgGC- -5'
10342 5' -51.8 NC_002687.1 + 330028 0.66 0.999275
Target:  5'- uGCAGGCGcuuGGgAAGuuGAGUGCGgUCGc -3'
miRNA:   3'- -UGUUUGU---UCgUUUggCUCACGCgGGC- -5'
10342 5' -51.8 NC_002687.1 + 209740 0.66 0.999275
Target:  5'- -aGAACGAGgAAuauccucgaCGGGUGUGCCCu -3'
miRNA:   3'- ugUUUGUUCgUUug-------GCUCACGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 202028 0.66 0.999275
Target:  5'- uCGAACc-GCAAACUG-GUcGUGCCCGu -3'
miRNA:   3'- uGUUUGuuCGUUUGGCuCA-CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 262047 0.66 0.999119
Target:  5'- gACGAACAucGCAGACUGAG-GgGCaUCGa -3'
miRNA:   3'- -UGUUUGUu-CGUUUGGCUCaCgCG-GGC- -5'
10342 5' -51.8 NC_002687.1 + 245722 0.66 0.999119
Target:  5'- uCAAACGuu---GCCGAGgagGCGUCCGa -3'
miRNA:   3'- uGUUUGUucguuUGGCUCa--CGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 105382 0.66 0.999119
Target:  5'- -aGAGCGAGgAAACCGGGcaGUGCUCc -3'
miRNA:   3'- ugUUUGUUCgUUUGGCUCa-CGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 77546 0.66 0.999102
Target:  5'- gAUGAugAAGUAcACCGAauucgaaGUGUGCUCGg -3'
miRNA:   3'- -UGUUugUUCGUuUGGCU-------CACGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 101931 0.66 0.998915
Target:  5'- gUAAACGcGCucGCCGAGUGUcacaugcgacaucGCCCu -3'
miRNA:   3'- uGUUUGUuCGuuUGGCUCACG-------------CGGGc -5'
10342 5' -51.8 NC_002687.1 + 57214 0.66 0.998719
Target:  5'- cACGcGCAGGCGAuGCUGAGUGUuggGUUCGa -3'
miRNA:   3'- -UGUuUGUUCGUU-UGGCUCACG---CGGGC- -5'
10342 5' -51.8 NC_002687.1 + 97216 0.66 0.998719
Target:  5'- -gAGAUucGC-GACCGGG-GCGUCCGg -3'
miRNA:   3'- ugUUUGuuCGuUUGGCUCaCGCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 45338 0.66 0.998719
Target:  5'- -gAGGCAGGCAG--CGGGacGCGCCCa -3'
miRNA:   3'- ugUUUGUUCGUUugGCUCa-CGCGGGc -5'
10342 5' -51.8 NC_002687.1 + 235116 0.67 0.997834
Target:  5'- cGCGAAgAAGCAGGCCGAGgaguuggaUGCaaucgagaaaGCUCGc -3'
miRNA:   3'- -UGUUUgUUCGUUUGGCUC--------ACG----------CGGGC- -5'
10342 5' -51.8 NC_002687.1 + 146162 0.67 0.99736
Target:  5'- cACGAGCAGGCGcgcguccauguCCGAG-GCGgCCa -3'
miRNA:   3'- -UGUUUGUUCGUuu---------GGCUCaCGCgGGc -5'
10342 5' -51.8 NC_002687.1 + 234681 0.67 0.996997
Target:  5'- -aAAugAGGaCAGGCCGA-UGaCGCCCGa -3'
miRNA:   3'- ugUUugUUC-GUUUGGCUcAC-GCGGGC- -5'
10342 5' -51.8 NC_002687.1 + 45134 0.67 0.996997
Target:  5'- gGCGAGCucguGGuCAAGUCGGGUGUGCuuGa -3'
miRNA:   3'- -UGUUUGu---UC-GUUUGGCUCACGCGggC- -5'
10342 5' -51.8 NC_002687.1 + 318012 0.67 0.996488
Target:  5'- gACAugGACGAcuGC--ACCGAGUGC-CCCGu -3'
miRNA:   3'- -UGU--UUGUU--CGuuUGGCUCACGcGGGC- -5'
10342 5' -51.8 NC_002687.1 + 87380 0.67 0.996322
Target:  5'- cCAGACcgcuuGAGCAGcccgucuaccagagGCCGAGUcaGCaGCCCGg -3'
miRNA:   3'- uGUUUG-----UUCGUU--------------UGGCUCA--CG-CGGGC- -5'
10342 5' -51.8 NC_002687.1 + 301950 0.67 0.995909
Target:  5'- -aGAACAGuCAAACagaGAGUGCucGCCCGc -3'
miRNA:   3'- ugUUUGUUcGUUUGg--CUCACG--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.