miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10349 5' -53.8 NC_002687.1 + 310843 0.65 0.996714
Target:  5'- cGUGCGCGcAGAauuuggcagcgaaUGGUCcggGGCGCGUg -3'
miRNA:   3'- -UACGUGCuUCU-------------GCCAGcuaCUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 84838 0.66 0.996235
Target:  5'- cGUGCguugugGCGuuguAGGCgaGGUCGAUcucuuuguccucGACGCGCa -3'
miRNA:   3'- -UACG------UGCu---UCUG--CCAGCUA------------CUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 78418 0.66 0.996235
Target:  5'- -aGCAcCGAGGcCGGUCacggguuUGAgGCGCu -3'
miRNA:   3'- uaCGU-GCUUCuGCCAGcu-----ACUgCGCG- -5'
10349 5' -53.8 NC_002687.1 + 103294 0.66 0.996178
Target:  5'- -aGgACGAGGACcuGGUCGcgGACGaauccuuCGCc -3'
miRNA:   3'- uaCgUGCUUCUG--CCAGCuaCUGC-------GCG- -5'
10349 5' -53.8 NC_002687.1 + 249878 0.66 0.996063
Target:  5'- cUGgACGAAGACcaaGGcCGAUcuucaaaaauacggGAUGCGCa -3'
miRNA:   3'- uACgUGCUUCUG---CCaGCUA--------------CUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 303907 0.66 0.995636
Target:  5'- -aGCuGCGAAGACGGgcccaGAUgcGACGUGg -3'
miRNA:   3'- uaCG-UGCUUCUGCCag---CUA--CUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 148656 0.66 0.995636
Target:  5'- cGUGCGCcauuucAAGAuCGGUCGAgu-UGCGCu -3'
miRNA:   3'- -UACGUGc-----UUCU-GCCAGCUacuGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 115951 0.66 0.995636
Target:  5'- uUGCGgGAAGACGGUCuGUGuugauaucuUGUGUa -3'
miRNA:   3'- uACGUgCUUCUGCCAGcUACu--------GCGCG- -5'
10349 5' -53.8 NC_002687.1 + 146213 0.66 0.995636
Target:  5'- cUGCACGGAGGCGaaCGccUGGCGCu- -3'
miRNA:   3'- uACGUGCUUCUGCcaGCu-ACUGCGcg -5'
10349 5' -53.8 NC_002687.1 + 329777 0.66 0.994963
Target:  5'- cUGCGCcGAGGCGuGccCGGUGGCGUGg -3'
miRNA:   3'- uACGUGcUUCUGC-Ca-GCUACUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 241957 0.66 0.994963
Target:  5'- cUGCACGGggcaAGAgGGUgCGAgaggGGCGUGg -3'
miRNA:   3'- uACGUGCU----UCUgCCA-GCUa---CUGCGCg -5'
10349 5' -53.8 NC_002687.1 + 308631 0.66 0.994207
Target:  5'- -cGCGCGGAGAgaccUGGUCugggguGGUGAgGgGCg -3'
miRNA:   3'- uaCGUGCUUCU----GCCAG------CUACUgCgCG- -5'
10349 5' -53.8 NC_002687.1 + 239687 0.66 0.994207
Target:  5'- gGUGUACGAccAGcACGGUCca-GACGcCGCc -3'
miRNA:   3'- -UACGUGCU--UC-UGCCAGcuaCUGC-GCG- -5'
10349 5' -53.8 NC_002687.1 + 151378 0.66 0.994207
Target:  5'- -cGCAUGGAaaACGGUCGAUGgACGUu- -3'
miRNA:   3'- uaCGUGCUUc-UGCCAGCUAC-UGCGcg -5'
10349 5' -53.8 NC_002687.1 + 301006 0.66 0.993963
Target:  5'- -gGCGuCGGauAGGCGGUCGAacgguaccccgcugUGGuuuCGCGCa -3'
miRNA:   3'- uaCGU-GCU--UCUGCCAGCU--------------ACU---GCGCG- -5'
10349 5' -53.8 NC_002687.1 + 244053 0.66 0.993363
Target:  5'- cUGUGCGAGGuCGGU-GGUGcCGCGa -3'
miRNA:   3'- uACGUGCUUCuGCCAgCUACuGCGCg -5'
10349 5' -53.8 NC_002687.1 + 168800 0.66 0.993363
Target:  5'- uUGCAUuu-GAUGGUCGc--GCGCGCa -3'
miRNA:   3'- uACGUGcuuCUGCCAGCuacUGCGCG- -5'
10349 5' -53.8 NC_002687.1 + 259265 0.67 0.992422
Target:  5'- --cCACGAGGAuCGGgcaaGAUGACGCu- -3'
miRNA:   3'- uacGUGCUUCU-GCCag--CUACUGCGcg -5'
10349 5' -53.8 NC_002687.1 + 234673 0.67 0.992422
Target:  5'- gAUGaucaaaAUGAGGACaGGcCGAUGACGCccgaGCa -3'
miRNA:   3'- -UACg-----UGCUUCUG-CCaGCUACUGCG----CG- -5'
10349 5' -53.8 NC_002687.1 + 184823 0.67 0.992422
Target:  5'- -gGCAUGGAGAUGGUa-GUG-CGCGa -3'
miRNA:   3'- uaCGUGCUUCUGCCAgcUACuGCGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.