miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10353 3' -51.7 NC_002687.1 + 226798 0.66 0.998207
Target:  5'- gGGAGCucCAGCu--GCCuGCGuAGCCGu -3'
miRNA:   3'- aUUUCG--GUCGuuuCGGuCGUuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 13023 0.66 0.998207
Target:  5'- gAGAGCUGGUgAAAGgCAGCAGGGUa- -3'
miRNA:   3'- aUUUCGGUCG-UUUCgGUCGUUUCGgc -5'
10353 3' -51.7 NC_002687.1 + 157203 0.66 0.998207
Target:  5'- --cAGCUGGUucAGCCAGUAGuccGCCa -3'
miRNA:   3'- auuUCGGUCGuuUCGGUCGUUu--CGGc -5'
10353 3' -51.7 NC_002687.1 + 280914 0.66 0.998207
Target:  5'- cGAAGCCucAGCGAuGCCGG--GGGCCc -3'
miRNA:   3'- aUUUCGG--UCGUUuCGGUCguUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 330872 0.66 0.998207
Target:  5'- -cAGGCCcGCucgcuGGCCAGCA--GCCu -3'
miRNA:   3'- auUUCGGuCGuu---UCGGUCGUuuCGGc -5'
10353 3' -51.7 NC_002687.1 + 330571 0.66 0.998207
Target:  5'- --uGGCguGCAcauGCCGGC--AGCCGu -3'
miRNA:   3'- auuUCGguCGUuu-CGGUCGuuUCGGC- -5'
10353 3' -51.7 NC_002687.1 + 279637 0.66 0.998207
Target:  5'- -uGGGCCGGUGGuGCCGGCAccaccuGCUGc -3'
miRNA:   3'- auUUCGGUCGUUuCGGUCGUuu----CGGC- -5'
10353 3' -51.7 NC_002687.1 + 104323 0.66 0.998207
Target:  5'- gUAGAGCCAcGaacacaAAGGCCAGCGu--CCGa -3'
miRNA:   3'- -AUUUCGGU-Cg-----UUUCGGUCGUuucGGC- -5'
10353 3' -51.7 NC_002687.1 + 295672 0.66 0.998207
Target:  5'- ---cGCU-GCAGGGCCAGgGGAGuuGu -3'
miRNA:   3'- auuuCGGuCGUUUCGGUCgUUUCggC- -5'
10353 3' -51.7 NC_002687.1 + 125141 0.66 0.997864
Target:  5'- aAGAGCCGGCGGAGUCcGUgucgaugaacgGAAGCa- -3'
miRNA:   3'- aUUUCGGUCGUUUCGGuCG-----------UUUCGgc -5'
10353 3' -51.7 NC_002687.1 + 158835 0.66 0.997864
Target:  5'- ---cGCCGGUcgAAAGCCcggaGGCGGcGGCCGu -3'
miRNA:   3'- auuuCGGUCG--UUUCGG----UCGUU-UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 239855 0.66 0.997864
Target:  5'- gGAuGCUGGCAAgaGGaaAGCGAAGCCu -3'
miRNA:   3'- aUUuCGGUCGUU--UCggUCGUUUCGGc -5'
10353 3' -51.7 NC_002687.1 + 2005 0.66 0.997469
Target:  5'- -cAAGUCGGUGAAGUCAGCGuGGUa- -3'
miRNA:   3'- auUUCGGUCGUUUCGGUCGUuUCGgc -5'
10353 3' -51.7 NC_002687.1 + 212668 0.66 0.997469
Target:  5'- gGAuGCCAGC-GAGCCGGaguuCGAcGCCGc -3'
miRNA:   3'- aUUuCGGUCGuUUCGGUC----GUUuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 48772 0.66 0.997469
Target:  5'- ---uGCCAGCuucuGGCUAGguG-GCCGu -3'
miRNA:   3'- auuuCGGUCGuu--UCGGUCguUuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 257372 0.66 0.997469
Target:  5'- -cGGGCCAGUguguaucgGAGGUgugCAGCAucGCCGc -3'
miRNA:   3'- auUUCGGUCG--------UUUCG---GUCGUuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 236534 0.66 0.997294
Target:  5'- ---cGCCcGcCGAAGCCAGCAcuuuuuuaucuucGGCCGa -3'
miRNA:   3'- auuuCGGuC-GUUUCGGUCGUu------------UCGGC- -5'
10353 3' -51.7 NC_002687.1 + 330507 0.66 0.997014
Target:  5'- aAAAGCCAGCA----CGGCucAGCCa -3'
miRNA:   3'- aUUUCGGUCGUuucgGUCGuuUCGGc -5'
10353 3' -51.7 NC_002687.1 + 314673 0.66 0.997014
Target:  5'- -cAGGCUaugaaaaaGGCAGAuGCCAGUGucGCCGc -3'
miRNA:   3'- auUUCGG--------UCGUUU-CGGUCGUuuCGGC- -5'
10353 3' -51.7 NC_002687.1 + 283195 0.66 0.997014
Target:  5'- aGGGGCggCAGCAccAGGCgCGGCGgGGGCCGu -3'
miRNA:   3'- aUUUCG--GUCGU--UUCG-GUCGU-UUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.