Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10353 | 3' | -51.7 | NC_002687.1 | + | 226798 | 0.66 | 0.998207 |
Target: 5'- gGGAGCucCAGCu--GCCuGCGuAGCCGu -3' miRNA: 3'- aUUUCG--GUCGuuuCGGuCGUuUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 13023 | 0.66 | 0.998207 |
Target: 5'- gAGAGCUGGUgAAAGgCAGCAGGGUa- -3' miRNA: 3'- aUUUCGGUCG-UUUCgGUCGUUUCGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 157203 | 0.66 | 0.998207 |
Target: 5'- --cAGCUGGUucAGCCAGUAGuccGCCa -3' miRNA: 3'- auuUCGGUCGuuUCGGUCGUUu--CGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 280914 | 0.66 | 0.998207 |
Target: 5'- cGAAGCCucAGCGAuGCCGG--GGGCCc -3' miRNA: 3'- aUUUCGG--UCGUUuCGGUCguUUCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 330872 | 0.66 | 0.998207 |
Target: 5'- -cAGGCCcGCucgcuGGCCAGCA--GCCu -3' miRNA: 3'- auUUCGGuCGuu---UCGGUCGUuuCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 330571 | 0.66 | 0.998207 |
Target: 5'- --uGGCguGCAcauGCCGGC--AGCCGu -3' miRNA: 3'- auuUCGguCGUuu-CGGUCGuuUCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 279637 | 0.66 | 0.998207 |
Target: 5'- -uGGGCCGGUGGuGCCGGCAccaccuGCUGc -3' miRNA: 3'- auUUCGGUCGUUuCGGUCGUuu----CGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 104323 | 0.66 | 0.998207 |
Target: 5'- gUAGAGCCAcGaacacaAAGGCCAGCGu--CCGa -3' miRNA: 3'- -AUUUCGGU-Cg-----UUUCGGUCGUuucGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 295672 | 0.66 | 0.998207 |
Target: 5'- ---cGCU-GCAGGGCCAGgGGAGuuGu -3' miRNA: 3'- auuuCGGuCGUUUCGGUCgUUUCggC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 125141 | 0.66 | 0.997864 |
Target: 5'- aAGAGCCGGCGGAGUCcGUgucgaugaacgGAAGCa- -3' miRNA: 3'- aUUUCGGUCGUUUCGGuCG-----------UUUCGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 158835 | 0.66 | 0.997864 |
Target: 5'- ---cGCCGGUcgAAAGCCcggaGGCGGcGGCCGu -3' miRNA: 3'- auuuCGGUCG--UUUCGG----UCGUU-UCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 239855 | 0.66 | 0.997864 |
Target: 5'- gGAuGCUGGCAAgaGGaaAGCGAAGCCu -3' miRNA: 3'- aUUuCGGUCGUU--UCggUCGUUUCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 2005 | 0.66 | 0.997469 |
Target: 5'- -cAAGUCGGUGAAGUCAGCGuGGUa- -3' miRNA: 3'- auUUCGGUCGUUUCGGUCGUuUCGgc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 212668 | 0.66 | 0.997469 |
Target: 5'- gGAuGCCAGC-GAGCCGGaguuCGAcGCCGc -3' miRNA: 3'- aUUuCGGUCGuUUCGGUC----GUUuCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 48772 | 0.66 | 0.997469 |
Target: 5'- ---uGCCAGCuucuGGCUAGguG-GCCGu -3' miRNA: 3'- auuuCGGUCGuu--UCGGUCguUuCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 257372 | 0.66 | 0.997469 |
Target: 5'- -cGGGCCAGUguguaucgGAGGUgugCAGCAucGCCGc -3' miRNA: 3'- auUUCGGUCG--------UUUCG---GUCGUuuCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 236534 | 0.66 | 0.997294 |
Target: 5'- ---cGCCcGcCGAAGCCAGCAcuuuuuuaucuucGGCCGa -3' miRNA: 3'- auuuCGGuC-GUUUCGGUCGUu------------UCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 330507 | 0.66 | 0.997014 |
Target: 5'- aAAAGCCAGCA----CGGCucAGCCa -3' miRNA: 3'- aUUUCGGUCGUuucgGUCGuuUCGGc -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 314673 | 0.66 | 0.997014 |
Target: 5'- -cAGGCUaugaaaaaGGCAGAuGCCAGUGucGCCGc -3' miRNA: 3'- auUUCGG--------UCGUUU-CGGUCGUuuCGGC- -5' |
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10353 | 3' | -51.7 | NC_002687.1 | + | 283195 | 0.66 | 0.997014 |
Target: 5'- aGGGGCggCAGCAccAGGCgCGGCGgGGGCCGu -3' miRNA: 3'- aUUUCG--GUCGU--UUCG-GUCGU-UUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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