miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10359 5' -49.5 NC_002687.1 + 17222 0.66 0.999939
Target:  5'- ---gGAACACgAGUGUGUUgACCuCGu -3'
miRNA:   3'- auuaUUUGUGgUCACGCGAgUGGuGC- -5'
10359 5' -49.5 NC_002687.1 + 131238 0.66 0.999939
Target:  5'- aUGAUAAACGCCAacaGCGCgUCACgagGCGa -3'
miRNA:   3'- -AUUAUUUGUGGUca-CGCG-AGUGg--UGC- -5'
10359 5' -49.5 NC_002687.1 + 121481 0.66 0.99992
Target:  5'- ----uGGC-CCGGggucGCGUUCGCCACa -3'
miRNA:   3'- auuauUUGuGGUCa---CGCGAGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 71764 0.66 0.999897
Target:  5'- gAGUAcuuGACGCCguaugcGGUGgcacCGCUCACUGCGg -3'
miRNA:   3'- aUUAU---UUGUGG------UCAC----GCGAGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 202085 0.66 0.999897
Target:  5'- cAGUGGAaACCAGUGaaacauGC-CACCGCGu -3'
miRNA:   3'- aUUAUUUgUGGUCACg-----CGaGUGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 261683 0.66 0.999897
Target:  5'- ---cGAACACCccacaUGCGUUCcCCGCGa -3'
miRNA:   3'- auuaUUUGUGGuc---ACGCGAGuGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 166640 0.66 0.999867
Target:  5'- -----cGCGCCGGccGUGCUCACCcucuCGg -3'
miRNA:   3'- auuauuUGUGGUCa-CGCGAGUGGu---GC- -5'
10359 5' -49.5 NC_002687.1 + 280843 0.66 0.999867
Target:  5'- gGGUA-ACGCaGGUGCGUgCACCACc -3'
miRNA:   3'- aUUAUuUGUGgUCACGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 224503 0.66 0.999867
Target:  5'- ----cAGCGCCAGcgccaGCGC-CACCGCc -3'
miRNA:   3'- auuauUUGUGGUCa----CGCGaGUGGUGc -5'
10359 5' -49.5 NC_002687.1 + 16708 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 15520 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 14396 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 38506 0.66 0.999829
Target:  5'- cGAUGugccgcCACCGGUGCcCUCgauaACCGCGa -3'
miRNA:   3'- aUUAUuu----GUGGUCACGcGAG----UGGUGC- -5'
10359 5' -49.5 NC_002687.1 + 16112 0.66 0.999829
Target:  5'- -----cGCAgaCAGUGCGCUCACgGuCGa -3'
miRNA:   3'- auuauuUGUg-GUCACGCGAGUGgU-GC- -5'
10359 5' -49.5 NC_002687.1 + 153020 0.66 0.999829
Target:  5'- ---gAAACAuCCuGUGCGCUgCACaCGCa -3'
miRNA:   3'- auuaUUUGU-GGuCACGCGA-GUG-GUGc -5'
10359 5' -49.5 NC_002687.1 + 252352 0.66 0.999825
Target:  5'- ---aAAACGCCGGUaccccucggcgccGCGCUCAuuUCGCa -3'
miRNA:   3'- auuaUUUGUGGUCA-------------CGCGAGU--GGUGc -5'
10359 5' -49.5 NC_002687.1 + 135017 0.67 0.999783
Target:  5'- ----cAGCGCCAGcGaCGCUCuCCGCa -3'
miRNA:   3'- auuauUUGUGGUCaC-GCGAGuGGUGc -5'
10359 5' -49.5 NC_002687.1 + 279138 0.67 0.999783
Target:  5'- ---aGAGCACCAGUGg---CACCugGg -3'
miRNA:   3'- auuaUUUGUGGUCACgcgaGUGGugC- -5'
10359 5' -49.5 NC_002687.1 + 146202 0.67 0.999783
Target:  5'- ---cGAACGCCuG-GCGCUCuuCCugGu -3'
miRNA:   3'- auuaUUUGUGGuCaCGCGAGu-GGugC- -5'
10359 5' -49.5 NC_002687.1 + 11042 0.67 0.999783
Target:  5'- ----cAGCACCAagucuUGCGCcgCACCACa -3'
miRNA:   3'- auuauUUGUGGUc----ACGCGa-GUGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.