miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10386 5' -54.9 NC_002687.1 + 155125 0.66 0.986004
Target:  5'- uUGAGCUACAaaacCCgCCUUcGUCCaCCa- -3'
miRNA:   3'- -ACUCGAUGUgu--GG-GGAAaCAGG-GGaa -5'
10386 5' -54.9 NC_002687.1 + 45151 0.66 0.984309
Target:  5'- ---cCUGCACACUUCUUUG-CCCCa- -3'
miRNA:   3'- acucGAUGUGUGGGGAAACaGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 308222 0.66 0.978285
Target:  5'- -aAGCaagaaUACACACCuCCUc-GUCCCCUg -3'
miRNA:   3'- acUCG-----AUGUGUGG-GGAaaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 297666 0.66 0.978285
Target:  5'- --uGCUcGCGCGCCUCUgcgUGUCCCg-- -3'
miRNA:   3'- acuCGA-UGUGUGGGGAa--ACAGGGgaa -5'
10386 5' -54.9 NC_002687.1 + 89214 0.67 0.97594
Target:  5'- gGGGaCUGCugGCCUCa-UGUCCCUUUu -3'
miRNA:   3'- aCUC-GAUGugUGGGGaaACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 140674 0.67 0.973415
Target:  5'- uUGAuGCUAUGCGCCuucacgcaCC-UUGUCCCCa- -3'
miRNA:   3'- -ACU-CGAUGUGUGG--------GGaAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 44915 0.67 0.961388
Target:  5'- gGAGCUGCAUugCUUUgcuUCCCCa- -3'
miRNA:   3'- aCUCGAUGUGugGGGAaacAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 17187 0.68 0.946034
Target:  5'- --cGCUGCuAgACCCCUcgGUCUCCUg -3'
miRNA:   3'- acuCGAUG-UgUGGGGAaaCAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 52946 0.69 0.910564
Target:  5'- gUGAGaUGCACAacuuuuuguCCCCacaccuUUUGUCCCCUUa -3'
miRNA:   3'- -ACUCgAUGUGU---------GGGG------AAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 10082 0.7 0.898396
Target:  5'- gGGGUguaGCACcCCCCUccGUCCCCg- -3'
miRNA:   3'- aCUCGa--UGUGuGGGGAaaCAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 51946 0.7 0.891981
Target:  5'- gUGAGaUGCACuCCUUUUUGUCCUCUUg -3'
miRNA:   3'- -ACUCgAUGUGuGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 178825 0.71 0.871447
Target:  5'- -aAGCUuucuCGCAaCCCUUUGUCCCCc- -3'
miRNA:   3'- acUCGAu---GUGUgGGGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 120725 0.71 0.849078
Target:  5'- cGAGCacgccacccUACACACCUCUUcuUCCCCg- -3'
miRNA:   3'- aCUCG---------AUGUGUGGGGAAacAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 332527 0.74 0.715938
Target:  5'- -cGGCUgcaGCACACCCUggcguucUUGUCCCCUUu -3'
miRNA:   3'- acUCGA---UGUGUGGGGa------AACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51130 0.79 0.462826
Target:  5'- gUGAGCUACGCACaCUgUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGgGGaAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 52076 0.8 0.410241
Target:  5'- gUGAGCUACGCACaCUgUUGUCCCCUc -3'
miRNA:   3'- -ACUCGAUGUGUGgGGaAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 54910 0.83 0.264233
Target:  5'- gUGAGCUGCACACCUUUUUGUCUUCUc -3'
miRNA:   3'- -ACUCGAUGUGUGGGGAAACAGGGGAa -5'
10386 5' -54.9 NC_002687.1 + 54554 0.83 0.258162
Target:  5'- gUGAGCUGCACAUuuUUUUGUCCCCa- -3'
miRNA:   3'- -ACUCGAUGUGUGggGAAACAGGGGaa -5'
10386 5' -54.9 NC_002687.1 + 228115 0.84 0.252207
Target:  5'- gUGAGaUACACACCCUUUUGUCCUCUUg -3'
miRNA:   3'- -ACUCgAUGUGUGGGGAAACAGGGGAA- -5'
10386 5' -54.9 NC_002687.1 + 51211 0.84 0.235017
Target:  5'- gUGAaCUGCACACCCUUUUGUCCCCc- -3'
miRNA:   3'- -ACUcGAUGUGUGGGGAAACAGGGGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.