miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 11523 0.66 0.90767
Target:  5'- aUAGCAGCUGCGACAcGa---GCGGUa- -3'
miRNA:   3'- -GUCGUCGAUGCUGU-CggagCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 173293 0.66 0.903632
Target:  5'- cCAGCAGCcucgauagcgcggGCGACAGCagagguagagcaggCUCGgaaagaGGCCGa -3'
miRNA:   3'- -GUCGUCGa------------UGCUGUCG--------------GAGCg-----CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 282076 0.66 0.901871
Target:  5'- uGGCAGCaGCGGCGGC-UCG-GGUCc -3'
miRNA:   3'- gUCGUCGaUGCUGUCGgAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 223560 0.66 0.901871
Target:  5'- gCAGCAGUUcgGGCAGCUcgggcagCGCGGUCc -3'
miRNA:   3'- -GUCGUCGAugCUGUCGGa------GCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 298265 0.66 0.901871
Target:  5'- -uGCGGCUGgagcCGA-AGCCUCaCGGCCu -3'
miRNA:   3'- guCGUCGAU----GCUgUCGGAGcGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 311447 0.66 0.901871
Target:  5'- aAGCA--UGUGGCGGCgCUgGCGGCCGa -3'
miRNA:   3'- gUCGUcgAUGCUGUCG-GAgCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 292956 0.66 0.895871
Target:  5'- aCAGCGGgagGCGACAGCCccuUC-CGGCa- -3'
miRNA:   3'- -GUCGUCga-UGCUGUCGG---AGcGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 98027 0.66 0.895871
Target:  5'- uCGGCAGCcguCGAggcccuaGGCUUCGgGGCCc -3'
miRNA:   3'- -GUCGUCGau-GCUg------UCGGAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 18581 0.66 0.895871
Target:  5'- -cGguGCUGCGACGGUgUCGUccuGCUGu -3'
miRNA:   3'- guCguCGAUGCUGUCGgAGCGc--CGGC- -5'
10410 5' -59.9 NC_002687.1 + 200113 0.66 0.895871
Target:  5'- uGGUgccGGCgACGACGGCCgCGC-GCCGu -3'
miRNA:   3'- gUCG---UCGaUGCUGUCGGaGCGcCGGC- -5'
10410 5' -59.9 NC_002687.1 + 261994 0.66 0.889041
Target:  5'- gCAGCGGCUgucugugGC-ACAGuUUUCGUGGCCa -3'
miRNA:   3'- -GUCGUCGA-------UGcUGUC-GGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 332277 0.66 0.883276
Target:  5'- aCAGCGGCUcacaccauugcgGCGGCGGCgCUUG-GGCg- -3'
miRNA:   3'- -GUCGUCGA------------UGCUGUCG-GAGCgCCGgc -5'
10410 5' -59.9 NC_002687.1 + 282707 0.66 0.876687
Target:  5'- -cGCGGaggauaGCGGCAGUCUCcgacGCGGUCGg -3'
miRNA:   3'- guCGUCga----UGCUGUCGGAG----CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 168755 0.66 0.876687
Target:  5'- cCGGuCGGCUccugUGuCAGCCUCuucuuuuuuGCGGCCGg -3'
miRNA:   3'- -GUC-GUCGAu---GCuGUCGGAG---------CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 254865 0.66 0.876687
Target:  5'- aGGCAG--AUGGCGGCCUUGuCGGCa- -3'
miRNA:   3'- gUCGUCgaUGCUGUCGGAGC-GCCGgc -5'
10410 5' -59.9 NC_002687.1 + 208204 0.67 0.869908
Target:  5'- gCAGCAGCaGCGACAGCa--GCaGCg- -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGgagCGcCGgc -5'
10410 5' -59.9 NC_002687.1 + 41332 0.67 0.862945
Target:  5'- uCAGCAGCU-CGACGcuuucGCCagaGCGGCg- -3'
miRNA:   3'- -GUCGUCGAuGCUGU-----CGGag-CGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 159953 0.67 0.848483
Target:  5'- gGGCGGCcaaGGCAGCCgcCGCcaaGGCCa -3'
miRNA:   3'- gUCGUCGaugCUGUCGGa-GCG---CCGGc -5'
10410 5' -59.9 NC_002687.1 + 309184 0.67 0.840994
Target:  5'- uGGCAucgauGCUGCGGCGGagaCUgGCGGCg- -3'
miRNA:   3'- gUCGU-----CGAUGCUGUCg--GAgCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 17849 0.68 0.823155
Target:  5'- aAGCGGC-AUGAUgaaugucagugccaAGCgUUGCGGCCGc -3'
miRNA:   3'- gUCGUCGaUGCUG--------------UCGgAGCGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.