miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 173566 0.66 0.999893
Target:  5'- aCUGGAGGcgcAGGUGGaGGCGGaggCGGaGGCg -3'
miRNA:   3'- -GGCUUUC---UCUAUUgCUGCCa--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 223484 0.66 0.999893
Target:  5'- uUCGGGAuGcGGUGGCGGgGG-CGGGGg -3'
miRNA:   3'- -GGCUUU-CuCUAUUGCUgCCaGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 225468 0.66 0.999876
Target:  5'- gCUGAAGGAucUGacggacgaagcuuacGCGGCGG-CGGcGGCg -3'
miRNA:   3'- -GGCUUUCUcuAU---------------UGCUGCCaGCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 75910 0.66 0.999863
Target:  5'- cUCGAAcAGAGAauacgaacgaUGACGA-GGUCGGGu- -3'
miRNA:   3'- -GGCUU-UCUCU----------AUUGCUgCCAGCCCcg -5'
10419 5' -51.2 NC_002687.1 + 10360 0.66 0.999863
Target:  5'- uCCGAAGGcGGAguggcuGCGGCGa-CGGGGg -3'
miRNA:   3'- -GGCUUUC-UCUau----UGCUGCcaGCCCCg -5'
10419 5' -51.2 NC_002687.1 + 224414 0.66 0.999863
Target:  5'- gCCGAuacuGAUGGCGAUGGcagUGGuGGUg -3'
miRNA:   3'- -GGCUuucuCUAUUGCUGCCa--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 291455 0.66 0.999863
Target:  5'- -aGggGGAGAgagGAgGGgGGggGGGGUg -3'
miRNA:   3'- ggCuuUCUCUa--UUgCUgCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 172286 0.66 0.999827
Target:  5'- gCGguGGGGA-----ACGGUgGGGGCg -3'
miRNA:   3'- gGCuuUCUCUauugcUGCCAgCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 281789 0.66 0.999827
Target:  5'- gCGuguGGGA--ACGGCGGgggcaGGGGCc -3'
miRNA:   3'- gGCuuuCUCUauUGCUGCCag---CCCCG- -5'
10419 5' -51.2 NC_002687.1 + 231581 0.66 0.999827
Target:  5'- -gGAguGAGAGAUAGugccaGACGGUUGGcugaccgaGGCa -3'
miRNA:   3'- ggCU--UUCUCUAUUg----CUGCCAGCC--------CCG- -5'
10419 5' -51.2 NC_002687.1 + 166279 0.66 0.999827
Target:  5'- gCCGAGAGGGugAGC-ACGGcCGGcGCg -3'
miRNA:   3'- -GGCUUUCUCuaUUGcUGCCaGCCcCG- -5'
10419 5' -51.2 NC_002687.1 + 252873 0.66 0.999815
Target:  5'- aCGGGAGAGAgguCGuugucgaacaucacGCGcaCGGGGCg -3'
miRNA:   3'- gGCUUUCUCUauuGC--------------UGCcaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 33645 0.66 0.999783
Target:  5'- gCGGAAGAGAcAGCuGGCacaCGGGGUa -3'
miRNA:   3'- gGCUUUCUCUaUUG-CUGccaGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 93574 0.66 0.999783
Target:  5'- -aGAucGAGAUGuucaucucaaGgGACGGg-GGGGCg -3'
miRNA:   3'- ggCUuuCUCUAU----------UgCUGCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 316024 0.66 0.999783
Target:  5'- gCCGAuGGugccGGUGGgGACGGU-GGGGa -3'
miRNA:   3'- -GGCUuUCu---CUAUUgCUGCCAgCCCCg -5'
10419 5' -51.2 NC_002687.1 + 65266 0.66 0.999729
Target:  5'- gCCGGGAG-GAUAAUGGaugaGG-CGGGcGUa -3'
miRNA:   3'- -GGCUUUCuCUAUUGCUg---CCaGCCC-CG- -5'
10419 5' -51.2 NC_002687.1 + 292795 0.66 0.999729
Target:  5'- aCUGGAAGcGGUGGCGgccGCGG-CGcacGGGCg -3'
miRNA:   3'- -GGCUUUCuCUAUUGC---UGCCaGC---CCCG- -5'
10419 5' -51.2 NC_002687.1 + 310030 0.66 0.999729
Target:  5'- uCCGAAagccccgcgcuuGGGGGUcccgucccgaGACGAaguccgGGUgGGGGCa -3'
miRNA:   3'- -GGCUU------------UCUCUA----------UUGCUg-----CCAgCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 43293 0.66 0.999663
Target:  5'- aUGAGAGGGAcaauuucaGACGGCGcauUgGGGGCa -3'
miRNA:   3'- gGCUUUCUCUa-------UUGCUGCc--AgCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 316144 0.67 0.999584
Target:  5'- uCCGAc-GAGGUAACGgcauccggugagGCGGaugcagcucaUUGGGGCc -3'
miRNA:   3'- -GGCUuuCUCUAUUGC------------UGCC----------AGCCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.