miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 153463 0.66 0.999992
Target:  5'- aCGAGAcGGCGCGGAGuggcgcGCUUagGAGGuggACUa -3'
miRNA:   3'- -GCUCUaCCGUGUCUU------UGAG--CUCU---UGG- -5'
10423 3' -48.9 NC_002687.1 + 38312 0.66 0.999992
Target:  5'- uCGGGAUGGCgACAGuugGACcaaauggaUCGAucGAGCUg -3'
miRNA:   3'- -GCUCUACCG-UGUCu--UUG--------AGCU--CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 330772 0.66 0.999992
Target:  5'- gGAGGaGGgGgAGAA--UCGGGGACCg -3'
miRNA:   3'- gCUCUaCCgUgUCUUugAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 149384 0.66 0.999992
Target:  5'- aGAGAacGGaGCGGAcacGugUCGAGAACg -3'
miRNA:   3'- gCUCUa-CCgUGUCU---UugAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 209629 0.66 0.999992
Target:  5'- -cGGGUGGUcccCAGguGCUCGugcAGAGCCc -3'
miRNA:   3'- gcUCUACCGu--GUCuuUGAGC---UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 62767 0.66 0.999992
Target:  5'- -aAGAUGGUGCuggcGAAAC-CGAGGuCCa -3'
miRNA:   3'- gcUCUACCGUGu---CUUUGaGCUCUuGG- -5'
10423 3' -48.9 NC_002687.1 + 313332 0.66 0.999992
Target:  5'- -aGGccGGUGCGGAAGagUCGAGGAUCg -3'
miRNA:   3'- gcUCuaCCGUGUCUUUg-AGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 238622 0.66 0.999989
Target:  5'- gCGAGAgcaaGuGCACGGAAAUUgGAGcACa -3'
miRNA:   3'- -GCUCUa---C-CGUGUCUUUGAgCUCuUGg -5'
10423 3' -48.9 NC_002687.1 + 247808 0.66 0.999989
Target:  5'- gCGAGAcGGC--AGAAGUUCG-GAGCCg -3'
miRNA:   3'- -GCUCUaCCGugUCUUUGAGCuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 285896 0.66 0.999985
Target:  5'- -----cGGCACAGAGAC-CcuGAACCg -3'
miRNA:   3'- gcucuaCCGUGUCUUUGaGcuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 58731 0.66 0.999985
Target:  5'- uGAGGUaGUACAGcAGCUCGGcGAUCa -3'
miRNA:   3'- gCUCUAcCGUGUCuUUGAGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 119226 0.66 0.999985
Target:  5'- aGGGAU-GUACAGGuugUCGAGAACa -3'
miRNA:   3'- gCUCUAcCGUGUCUuugAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 271655 0.66 0.999985
Target:  5'- gGAGAUGaGUACAacaaGGACUCGGuGAuaACCa -3'
miRNA:   3'- gCUCUAC-CGUGUc---UUUGAGCU-CU--UGG- -5'
10423 3' -48.9 NC_002687.1 + 254561 0.66 0.99998
Target:  5'- --cGAUGGCGCAGA----CGAGGAgCu -3'
miRNA:   3'- gcuCUACCGUGUCUuugaGCUCUUgG- -5'
10423 3' -48.9 NC_002687.1 + 157475 0.66 0.99998
Target:  5'- aGuAGAUGGCGCAGAacGACcCacuGAACUg -3'
miRNA:   3'- gC-UCUACCGUGUCU--UUGaGcu-CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 258340 0.66 0.99998
Target:  5'- aCGAGcau-CACAGAucAAUUCGGGAACUg -3'
miRNA:   3'- -GCUCuaccGUGUCU--UUGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 82914 0.66 0.99998
Target:  5'- uGGGccguGUGGCACGGAAgaagggGCUCGGauuuGGACg -3'
miRNA:   3'- gCUC----UACCGUGUCUU------UGAGCU----CUUGg -5'
10423 3' -48.9 NC_002687.1 + 332823 0.66 0.99998
Target:  5'- aCGAGAuucugcaaaucuUGGUcgAGaAGACUCGGGAAgCCg -3'
miRNA:   3'- -GCUCU------------ACCGugUC-UUUGAGCUCUU-GG- -5'
10423 3' -48.9 NC_002687.1 + 149839 0.66 0.999979
Target:  5'- gCGAGGcgguguccgaaguUGGUAUu----CUCGAGAGCCu -3'
miRNA:   3'- -GCUCU-------------ACCGUGucuuuGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 74427 0.66 0.999973
Target:  5'- cCGAGAgccaGGCACAGGAcC-CGAuGAUCa -3'
miRNA:   3'- -GCUCUa---CCGUGUCUUuGaGCUcUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.