miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10491 3' -58.5 NC_002687.1 + 66792 0.66 0.946594
Target:  5'- uCCGCCGGGGCCuuGAuguuaaccguAGGUaugucaagUGCGGg- -3'
miRNA:   3'- -GGCGGUUCCGGugCU----------UCCG--------ACGUCgg -5'
10491 3' -58.5 NC_002687.1 + 233853 0.66 0.946594
Target:  5'- aCGCCGcaaAGGCCAUGcuuaaaGCGGCCg -3'
miRNA:   3'- gGCGGU---UCCGGUGCuuccgaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 282528 0.66 0.946594
Target:  5'- gCCGCCGcAGGCCcuacuccCGcc-GCUGCcGCCg -3'
miRNA:   3'- -GGCGGU-UCCGGu------GCuucCGACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 108008 0.66 0.946594
Target:  5'- uCCGCCGGGuaccGUUugGAuuGGUUGCuauGCCc -3'
miRNA:   3'- -GGCGGUUC----CGGugCUu-CCGACGu--CGG- -5'
10491 3' -58.5 NC_002687.1 + 123705 0.66 0.942422
Target:  5'- cCCGCau-GGUCaACGucGGCaGguGCCg -3'
miRNA:   3'- -GGCGguuCCGG-UGCuuCCGaCguCGG- -5'
10491 3' -58.5 NC_002687.1 + 314853 0.66 0.942422
Target:  5'- aCGaCCAAGGCCAaagaaGccAAGGCcaCGGCCu -3'
miRNA:   3'- gGC-GGUUCCGGUg----C--UUCCGacGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 171469 0.66 0.938044
Target:  5'- cCCGUucgaCGAGGCCucguCGAGGGg-GCuuguGCCa -3'
miRNA:   3'- -GGCG----GUUCCGGu---GCUUCCgaCGu---CGG- -5'
10491 3' -58.5 NC_002687.1 + 276726 0.66 0.938044
Target:  5'- -aGCUggGGCUGUGgcGGCUGCGuGUCc -3'
miRNA:   3'- ggCGGuuCCGGUGCuuCCGACGU-CGG- -5'
10491 3' -58.5 NC_002687.1 + 279439 0.66 0.938044
Target:  5'- cCCGCCAGacacagccgauGGCgGCGAguuugAGGCcgcUGguGUCa -3'
miRNA:   3'- -GGCGGUU-----------CCGgUGCU-----UCCG---ACguCGG- -5'
10491 3' -58.5 NC_002687.1 + 283556 0.66 0.938044
Target:  5'- cCCGCCGc-GCCugGu--GCUGCcGCCc -3'
miRNA:   3'- -GGCGGUucCGGugCuucCGACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 279080 0.66 0.937595
Target:  5'- gCCGCCAucGGCUgugucugGCGggGGUgu--GCCa -3'
miRNA:   3'- -GGCGGUu-CCGG-------UGCuuCCGacguCGG- -5'
10491 3' -58.5 NC_002687.1 + 291746 0.66 0.933459
Target:  5'- gCGCCcGGGCaagcaGCGAccGCaGCAGCa -3'
miRNA:   3'- gGCGGuUCCGg----UGCUucCGaCGUCGg -5'
10491 3' -58.5 NC_002687.1 + 120009 0.66 0.933459
Target:  5'- aCGCCAGGGUC-CGAcAGGUUu--GCCa -3'
miRNA:   3'- gGCGGUUCCGGuGCU-UCCGAcguCGG- -5'
10491 3' -58.5 NC_002687.1 + 159399 0.66 0.933459
Target:  5'- aCGCCGacAGaGCUACGAAGGUgaagGaauucagGGCCg -3'
miRNA:   3'- gGCGGU--UC-CGGUGCUUCCGa---Cg------UCGG- -5'
10491 3' -58.5 NC_002687.1 + 83658 0.66 0.933459
Target:  5'- aUGCCGuagaagcucuGGGUCAgCG-AGGCUGCuGUCa -3'
miRNA:   3'- gGCGGU----------UCCGGU-GCuUCCGACGuCGG- -5'
10491 3' -58.5 NC_002687.1 + 298428 0.66 0.932989
Target:  5'- cCCGguCCAAGcacgcgcGCgGCGgcGGCcGCGGCCu -3'
miRNA:   3'- -GGC--GGUUC-------CGgUGCuuCCGaCGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 30602 0.66 0.932989
Target:  5'- uUGCCucGAGGCCG-GggGGUUGCcgaggacAGUCa -3'
miRNA:   3'- gGCGG--UUCCGGUgCuuCCGACG-------UCGG- -5'
10491 3' -58.5 NC_002687.1 + 276159 0.66 0.932989
Target:  5'- aCGUgAAGGCCGCGGucGCgccgGCgucgaugAGCCu -3'
miRNA:   3'- gGCGgUUCCGGUGCUucCGa---CG-------UCGG- -5'
10491 3' -58.5 NC_002687.1 + 226997 0.66 0.928665
Target:  5'- gCGCCAAuGCCACaGAauguugggguGGGUUuGUGGCCa -3'
miRNA:   3'- gGCGGUUcCGGUG-CU----------UCCGA-CGUCGG- -5'
10491 3' -58.5 NC_002687.1 + 18580 0.66 0.928665
Target:  5'- aCGCgAuGGCgGCGggGgaaGCUGUGGUCa -3'
miRNA:   3'- gGCGgUuCCGgUGCuuC---CGACGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.