miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10580 5' -52 NC_002687.1 + 200477 0.66 0.999046
Target:  5'- aACGgcGCGCgGCCGUCGUCGccgGcACCa -3'
miRNA:   3'- cUGUaaCGUGgUGGCGGUAGUa--C-UGG- -5'
10580 5' -52 NC_002687.1 + 256027 0.66 0.999046
Target:  5'- -uCGUcGCuACCACCGUCAUCAccacacgGACUu -3'
miRNA:   3'- cuGUAaCG-UGGUGGCGGUAGUa------CUGG- -5'
10580 5' -52 NC_002687.1 + 155479 0.66 0.999046
Target:  5'- -cCAUUaGUACCuCUGacgaCAUCGUGGCCg -3'
miRNA:   3'- cuGUAA-CGUGGuGGCg---GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 166446 0.66 0.999046
Target:  5'- cGGCAcggGCAaguCCACCGCgGUUgcgAUGAUCg -3'
miRNA:   3'- -CUGUaa-CGU---GGUGGCGgUAG---UACUGG- -5'
10580 5' -52 NC_002687.1 + 249388 0.66 0.999046
Target:  5'- cGGCAUcuugGUACCAuCCGCuCGUCAaaucucUGugCa -3'
miRNA:   3'- -CUGUAa---CGUGGU-GGCG-GUAGU------ACugG- -5'
10580 5' -52 NC_002687.1 + 295724 0.66 0.999027
Target:  5'- uGCcgUGCACCcucgucaACCGCUcgagCcgGACCu -3'
miRNA:   3'- cUGuaACGUGG-------UGGCGGua--GuaCUGG- -5'
10580 5' -52 NC_002687.1 + 146020 0.66 0.998849
Target:  5'- ----cUGCGCCGCCGCUucuccGUCG-GACa -3'
miRNA:   3'- cuguaACGUGGUGGCGG-----UAGUaCUGg -5'
10580 5' -52 NC_002687.1 + 139599 0.66 0.998849
Target:  5'- uACAcgGCuCCAUCGCCGUaguUGACUc -3'
miRNA:   3'- cUGUaaCGuGGUGGCGGUAgu-ACUGG- -5'
10580 5' -52 NC_002687.1 + 145075 0.66 0.998849
Target:  5'- --gAUUGCAgCCcaggGCCGCCAaaAUGAUCa -3'
miRNA:   3'- cugUAACGU-GG----UGGCGGUagUACUGG- -5'
10580 5' -52 NC_002687.1 + 107889 0.66 0.998849
Target:  5'- aACGUucaUGCguagGCCAUCGCCGUC--GGCCc -3'
miRNA:   3'- cUGUA---ACG----UGGUGGCGGUAGuaCUGG- -5'
10580 5' -52 NC_002687.1 + 18944 0.66 0.998619
Target:  5'- uGACcacaGCuucccCCGCCGCCAUCGcGugCa -3'
miRNA:   3'- -CUGuaa-CGu----GGUGGCGGUAGUaCugG- -5'
10580 5' -52 NC_002687.1 + 154305 0.66 0.998619
Target:  5'- cGCAacUGCgACCAagcggUCGCCAaguUCGUGGCCg -3'
miRNA:   3'- cUGUa-ACG-UGGU-----GGCGGU---AGUACUGG- -5'
10580 5' -52 NC_002687.1 + 210246 0.66 0.998619
Target:  5'- -----gGCACCACUGCCAcCAcgGGCa -3'
miRNA:   3'- cuguaaCGUGGUGGCGGUaGUa-CUGg -5'
10580 5' -52 NC_002687.1 + 159953 0.66 0.998619
Target:  5'- gGGCGgccaagGCAgCCGCCGCCAa---GGCCa -3'
miRNA:   3'- -CUGUaa----CGU-GGUGGCGGUaguaCUGG- -5'
10580 5' -52 NC_002687.1 + 124888 0.66 0.998352
Target:  5'- cACA-UGCAgaCGCCGUugaccaucaauCAUCGUGACCu -3'
miRNA:   3'- cUGUaACGUg-GUGGCG-----------GUAGUACUGG- -5'
10580 5' -52 NC_002687.1 + 24909 0.66 0.998352
Target:  5'- ---uUUGCGCaaacguCGCUGCCGUCAUGAg- -3'
miRNA:   3'- cuguAACGUG------GUGGCGGUAGUACUgg -5'
10580 5' -52 NC_002687.1 + 99870 0.66 0.998352
Target:  5'- aAUAcUGCACCACCaaaaCCuUCAUGGCg -3'
miRNA:   3'- cUGUaACGUGGUGGc---GGuAGUACUGg -5'
10580 5' -52 NC_002687.1 + 301452 0.66 0.998352
Target:  5'- aGACA--GCACgGCCGCCccagaAUGACg -3'
miRNA:   3'- -CUGUaaCGUGgUGGCGGuag--UACUGg -5'
10580 5' -52 NC_002687.1 + 182546 0.66 0.998352
Target:  5'- cGAUGUU-CGCCACCGUCccCAcGGCCa -3'
miRNA:   3'- -CUGUAAcGUGGUGGCGGuaGUaCUGG- -5'
10580 5' -52 NC_002687.1 + 26166 0.66 0.998323
Target:  5'- -cCGUUGCGCCGgagggugUUGUCGUCGauaaUGACCa -3'
miRNA:   3'- cuGUAACGUGGU-------GGCGGUAGU----ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.