miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10596 3' -64 NC_002687.1 + 250656 0.66 0.743093
Target:  5'- aCCAuCGCCgAAGaCGCgGCCGuucucacgaaaauguCCGCAAa -3'
miRNA:   3'- aGGU-GCGGgUUC-GCGgCGGC---------------GGCGUU- -5'
10596 3' -64 NC_002687.1 + 11691 0.66 0.739534
Target:  5'- cCCGCuGCUCc--UGCUGCCGCCGCu- -3'
miRNA:   3'- aGGUG-CGGGuucGCGGCGGCGGCGuu -5'
10596 3' -64 NC_002687.1 + 71828 0.66 0.739534
Target:  5'- ---gUGCCUAAGCGCCGUCGUgcuaGCGg -3'
miRNA:   3'- agguGCGGGUUCGCGGCGGCGg---CGUu -5'
10596 3' -64 NC_002687.1 + 259040 0.66 0.730582
Target:  5'- uUCCACGCUCAu---CCGCCG-CGCGAc -3'
miRNA:   3'- -AGGUGCGGGUucgcGGCGGCgGCGUU- -5'
10596 3' -64 NC_002687.1 + 200909 0.66 0.730582
Target:  5'- gUCUucCGCCCGAGCGUCGaCGUCGg-- -3'
miRNA:   3'- -AGGu-GCGGGUUCGCGGCgGCGGCguu -5'
10596 3' -64 NC_002687.1 + 299233 0.66 0.721559
Target:  5'- gCCGCGCCCGAGgGCaGCaGCCa--- -3'
miRNA:   3'- aGGUGCGGGUUCgCGgCGgCGGcguu -5'
10596 3' -64 NC_002687.1 + 309169 0.66 0.721559
Target:  5'- gCC-CGUCCAuaucgaGGUgcugaGCCGCCaGCCGCAAc -3'
miRNA:   3'- aGGuGCGGGU------UCG-----CGGCGG-CGGCGUU- -5'
10596 3' -64 NC_002687.1 + 10545 0.66 0.721559
Target:  5'- gUUCuCGCUCGGGCGaUCGCCGUCGguAc -3'
miRNA:   3'- -AGGuGCGGGUUCGC-GGCGGCGGCguU- -5'
10596 3' -64 NC_002687.1 + 294881 0.66 0.712472
Target:  5'- uUCCAcCGCCU--GCGCCGCgaGgCGCAc -3'
miRNA:   3'- -AGGU-GCGGGuuCGCGGCGg-CgGCGUu -5'
10596 3' -64 NC_002687.1 + 255551 0.66 0.712472
Target:  5'- cCCACGCggAAGCagcaagggGuuGCCGUCGCAAg -3'
miRNA:   3'- aGGUGCGggUUCG--------CggCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 166318 0.66 0.712472
Target:  5'- gUCACaCUCgGAGCuuaucuugGCCGCCGCCGCGu -3'
miRNA:   3'- aGGUGcGGG-UUCG--------CGGCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 314391 0.66 0.712472
Target:  5'- uUCCuCGgCCGAaCGCgGCCGCUGUAGc -3'
miRNA:   3'- -AGGuGCgGGUUcGCGgCGGCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 3219 0.66 0.712472
Target:  5'- --gGCGCCaucGGCGCCcucgagaCCGCCGCAu -3'
miRNA:   3'- aggUGCGGgu-UCGCGGc------GGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 294744 0.66 0.703328
Target:  5'- gCUGCucCCCGcGCGCgCGCCGCuCGCGAg -3'
miRNA:   3'- aGGUGc-GGGUuCGCG-GCGGCG-GCGUU- -5'
10596 3' -64 NC_002687.1 + 17865 0.66 0.703328
Target:  5'- gUCAgUG-CCAAGCGuuGCgGCCGCAGc -3'
miRNA:   3'- aGGU-GCgGGUUCGCggCGgCGGCGUU- -5'
10596 3' -64 NC_002687.1 + 291602 0.66 0.694133
Target:  5'- uUCCGgGCaCCAaacAGUaGCC-CCGCCGCAc -3'
miRNA:   3'- -AGGUgCG-GGU---UCG-CGGcGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 39549 0.66 0.694133
Target:  5'- uUCCugG-CCAGGCGacugcucuacaCGCUGCUGCAu -3'
miRNA:   3'- -AGGugCgGGUUCGCg----------GCGGCGGCGUu -5'
10596 3' -64 NC_002687.1 + 225216 0.67 0.684895
Target:  5'- aCCGUGCC--GGCGCCGCCGCgucgGCGg -3'
miRNA:   3'- aGGUGCGGguUCGCGGCGGCGg---CGUu -5'
10596 3' -64 NC_002687.1 + 255622 0.67 0.675621
Target:  5'- aCCGCgGCUaCAAGCGCaucauucuuCGCCGCCGgGGg -3'
miRNA:   3'- aGGUG-CGG-GUUCGCG---------GCGGCGGCgUU- -5'
10596 3' -64 NC_002687.1 + 125075 0.67 0.65699
Target:  5'- gCCuggUGCCCAcaaagGGCGCCGuuGCCuCAAu -3'
miRNA:   3'- aGGu--GCGGGU-----UCGCGGCggCGGcGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.