miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11182 5' -45.4 NC_002816.1 + 93127 0.66 0.999981
Target:  5'- ----cGACACCAuacuCGacuACAACGGUg -3'
miRNA:   3'- gaaaaUUGUGGUu---GCgguUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 120283 0.66 0.999981
Target:  5'- -gUUUGAgGa-AACGCU-ACAACGGCa -3'
miRNA:   3'- gaAAAUUgUggUUGCGGuUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 49156 0.66 0.999981
Target:  5'- ----gAGCGCCAAguugGCCAgguucGCcGCGGCu -3'
miRNA:   3'- gaaaaUUGUGGUUg---CGGU-----UGuUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 120042 0.66 0.999981
Target:  5'- -----cGCGCCAGuguaGUCAACAGCGaGUa -3'
miRNA:   3'- gaaaauUGUGGUUg---CGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 30400 0.66 0.999981
Target:  5'- ---cUAACACCAccAUGCCcACAAUGa- -3'
miRNA:   3'- gaaaAUUGUGGU--UGCGGuUGUUGCcg -5'
11182 5' -45.4 NC_002816.1 + 117534 0.66 0.999981
Target:  5'- --aUUGGCGCacauGC-CCGGCGACGaGCg -3'
miRNA:   3'- gaaAAUUGUGgu--UGcGGUUGUUGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 39606 0.66 0.999981
Target:  5'- -------uGCCAGCGCac-CGugGGCa -3'
miRNA:   3'- gaaaauugUGGUUGCGguuGUugCCG- -5'
11182 5' -45.4 NC_002816.1 + 117263 0.66 0.999974
Target:  5'- gCUUUgacgGACaaACCAugGCCGACAuUGuGUa -3'
miRNA:   3'- -GAAAa---UUG--UGGUugCGGUUGUuGC-CG- -5'
11182 5' -45.4 NC_002816.1 + 45883 0.66 0.999974
Target:  5'- ----gGACACUGua-CCGGCGACGGUg -3'
miRNA:   3'- gaaaaUUGUGGUugcGGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 32894 0.66 0.999974
Target:  5'- ---gUGGCACaUggUGCCGAaguCGGCGGUg -3'
miRNA:   3'- gaaaAUUGUG-GuuGCGGUU---GUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 32379 0.66 0.999964
Target:  5'- ----cGGCGgUGAUGUCGcGCAACGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGCGGU-UGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 104039 0.66 0.999964
Target:  5'- aUUUgguACACCAccaaGUCGGguGCGGCg -3'
miRNA:   3'- gAAAau-UGUGGUug--CGGUUguUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 9721 0.66 0.999964
Target:  5'- ----cAGCACCcGCGCCAcauaaAUAuuuUGGCa -3'
miRNA:   3'- gaaaaUUGUGGuUGCGGU-----UGUu--GCCG- -5'
11182 5' -45.4 NC_002816.1 + 79094 0.66 0.999964
Target:  5'- --gUUGGcCACCAccuUGCaCAACAuggACGGCg -3'
miRNA:   3'- gaaAAUU-GUGGUu--GCG-GUUGU---UGCCG- -5'
11182 5' -45.4 NC_002816.1 + 67244 0.66 0.999964
Target:  5'- ---gUggUGCUggUGcCCAGCAACGGa -3'
miRNA:   3'- gaaaAuuGUGGuuGC-GGUUGUUGCCg -5'
11182 5' -45.4 NC_002816.1 + 97820 0.66 0.999963
Target:  5'- -aUUUGAUggacaaaACCAACuCCGACuAACGGUu -3'
miRNA:   3'- gaAAAUUG-------UGGUUGcGGUUG-UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 17111 0.66 0.999951
Target:  5'- -gUUUGACACUAuUGCCGcguACAuuGCGGa -3'
miRNA:   3'- gaAAAUUGUGGUuGCGGU---UGU--UGCCg -5'
11182 5' -45.4 NC_002816.1 + 19031 0.66 0.999951
Target:  5'- --aUUGAUuugGCCAauaGCGCCAAgucuaaGAUGGCa -3'
miRNA:   3'- gaaAAUUG---UGGU---UGCGGUUg-----UUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 117891 0.66 0.999951
Target:  5'- ----aGGCAgCAAUGgUAAUAAUGGCa -3'
miRNA:   3'- gaaaaUUGUgGUUGCgGUUGUUGCCG- -5'
11182 5' -45.4 NC_002816.1 + 39544 0.66 0.999934
Target:  5'- ----aAACACCGGCaCCuuugacugcACAGCGGUg -3'
miRNA:   3'- gaaaaUUGUGGUUGcGGu--------UGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.