miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 43414 0.66 0.95609
Target:  5'- gGCGagCACCAguUCAGCAGACUCAaccaCCAg -3'
miRNA:   3'- gCGUa-GUGGU--GGUUGUUUGGGUg---GGU- -5'
11197 5' -53.3 NC_002816.1 + 77310 0.66 0.95609
Target:  5'- aGCGUcCGCCACaucCAcACCCACUCc -3'
miRNA:   3'- gCGUA-GUGGUGguuGUuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 117 0.66 0.95609
Target:  5'- cCGCAUcCGCgaaGCCGaguACGAGCCCAUCa- -3'
miRNA:   3'- -GCGUA-GUGg--UGGU---UGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 121387 0.66 0.95609
Target:  5'- aCGC--CACCACCAugGAccACCgUGCCCu -3'
miRNA:   3'- -GCGuaGUGGUGGUugUU--UGG-GUGGGu -5'
11197 5' -53.3 NC_002816.1 + 56918 0.66 0.952011
Target:  5'- -aCAUCACCACUAcuacuaccacuaGCAAGCgCCACUg- -3'
miRNA:   3'- gcGUAGUGGUGGU------------UGUUUG-GGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 510 0.66 0.947686
Target:  5'- gCGCAUCaACCucuCCAaaaagggcuuuGCGuuCCCGCUCAc -3'
miRNA:   3'- -GCGUAG-UGGu--GGU-----------UGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 101451 0.66 0.947686
Target:  5'- gCGCAacgaCACUGCCAAUuucaugaaAGACCCuCCCGa -3'
miRNA:   3'- -GCGUa---GUGGUGGUUG--------UUUGGGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 45209 0.66 0.947686
Target:  5'- uGCuuaacCGCCGCCAcGCugucCCCACCCu -3'
miRNA:   3'- gCGua---GUGGUGGU-UGuuu-GGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 53051 0.66 0.947686
Target:  5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3'
miRNA:   3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 117754 0.66 0.947686
Target:  5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3'
miRNA:   3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32816 0.66 0.947686
Target:  5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3'
miRNA:   3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 46322 0.66 0.947686
Target:  5'- cCGCGacccuUCAcCCACCGACcccuAACaccaCCACCCGa -3'
miRNA:   3'- -GCGU-----AGU-GGUGGUUGu---UUG----GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 77667 0.66 0.943111
Target:  5'- aCGCA-CACCGuCCAACuuGagCGCCCAc -3'
miRNA:   3'- -GCGUaGUGGU-GGUUGuuUggGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 60172 0.66 0.943111
Target:  5'- gGUAUCAUUGCCGACAucAACuCCucCCCGc -3'
miRNA:   3'- gCGUAGUGGUGGUUGU--UUG-GGu-GGGU- -5'
11197 5' -53.3 NC_002816.1 + 27508 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 27556 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 57835 0.66 0.938283
Target:  5'- ----aCACCACCGACAAACUCGgCgAa -3'
miRNA:   3'- gcguaGUGGUGGUUGUUUGGGUgGgU- -5'
11197 5' -53.3 NC_002816.1 + 14855 0.66 0.938283
Target:  5'- uCGUAccgCACCGCCuGAC--ACCCGCCUc -3'
miRNA:   3'- -GCGUa--GUGGUGG-UUGuuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 31406 0.66 0.938283
Target:  5'- uCGCAaCAgCAUaCAACAcACCCACCUc -3'
miRNA:   3'- -GCGUaGUgGUG-GUUGUuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 102181 0.66 0.938283
Target:  5'- gCGCGUCGCuCACCAACcAAUCaCACg-- -3'
miRNA:   3'- -GCGUAGUG-GUGGUUGuUUGG-GUGggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.