Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11197 | 5' | -53.3 | NC_002816.1 | + | 43414 | 0.66 | 0.95609 |
Target: 5'- gGCGagCACCAguUCAGCAGACUCAaccaCCAg -3' miRNA: 3'- gCGUa-GUGGU--GGUUGUUUGGGUg---GGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 77310 | 0.66 | 0.95609 |
Target: 5'- aGCGUcCGCCACaucCAcACCCACUCc -3' miRNA: 3'- gCGUA-GUGGUGguuGUuUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 117 | 0.66 | 0.95609 |
Target: 5'- cCGCAUcCGCgaaGCCGaguACGAGCCCAUCa- -3' miRNA: 3'- -GCGUA-GUGg--UGGU---UGUUUGGGUGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 121387 | 0.66 | 0.95609 |
Target: 5'- aCGC--CACCACCAugGAccACCgUGCCCu -3' miRNA: 3'- -GCGuaGUGGUGGUugUU--UGG-GUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 56918 | 0.66 | 0.952011 |
Target: 5'- -aCAUCACCACUAcuacuaccacuaGCAAGCgCCACUg- -3' miRNA: 3'- gcGUAGUGGUGGU------------UGUUUG-GGUGGgu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 46322 | 0.66 | 0.947686 |
Target: 5'- cCGCGacccuUCAcCCACCGACcccuAACaccaCCACCCGa -3' miRNA: 3'- -GCGU-----AGU-GGUGGUUGu---UUG----GGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 45209 | 0.66 | 0.947686 |
Target: 5'- uGCuuaacCGCCGCCAcGCugucCCCACCCu -3' miRNA: 3'- gCGua---GUGGUGGU-UGuuu-GGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 101451 | 0.66 | 0.947686 |
Target: 5'- gCGCAacgaCACUGCCAAUuucaugaaAGACCCuCCCGa -3' miRNA: 3'- -GCGUa---GUGGUGGUUG--------UUUGGGuGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 53051 | 0.66 | 0.947686 |
Target: 5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3' miRNA: 3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 117754 | 0.66 | 0.947686 |
Target: 5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3' miRNA: 3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 32816 | 0.66 | 0.947686 |
Target: 5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3' miRNA: 3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 510 | 0.66 | 0.947686 |
Target: 5'- gCGCAUCaACCucuCCAaaaagggcuuuGCGuuCCCGCUCAc -3' miRNA: 3'- -GCGUAG-UGGu--GGU-----------UGUuuGGGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 27508 | 0.66 | 0.943111 |
Target: 5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3' miRNA: 3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 27556 | 0.66 | 0.943111 |
Target: 5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3' miRNA: 3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 60172 | 0.66 | 0.943111 |
Target: 5'- gGUAUCAUUGCCGACAucAACuCCucCCCGc -3' miRNA: 3'- gCGUAGUGGUGGUUGU--UUG-GGu-GGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 77667 | 0.66 | 0.943111 |
Target: 5'- aCGCA-CACCGuCCAACuuGagCGCCCAc -3' miRNA: 3'- -GCGUaGUGGU-GGUUGuuUggGUGGGU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 31406 | 0.66 | 0.938283 |
Target: 5'- uCGCAaCAgCAUaCAACAcACCCACCUc -3' miRNA: 3'- -GCGUaGUgGUG-GUUGUuUGGGUGGGu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 57835 | 0.66 | 0.938283 |
Target: 5'- ----aCACCACCGACAAACUCGgCgAa -3' miRNA: 3'- gcguaGUGGUGGUUGUUUGGGUgGgU- -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 102181 | 0.66 | 0.938283 |
Target: 5'- gCGCGUCGCuCACCAACcAAUCaCACg-- -3' miRNA: 3'- -GCGUAGUG-GUGGUUGuUUGG-GUGggu -5' |
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11197 | 5' | -53.3 | NC_002816.1 | + | 14855 | 0.66 | 0.938283 |
Target: 5'- uCGUAccgCACCGCCuGAC--ACCCGCCUc -3' miRNA: 3'- -GCGUa--GUGGUGG-UUGuuUGGGUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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