miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11197 5' -53.3 NC_002816.1 + 107794 0.68 0.878989
Target:  5'- -uCAgCGCCACCAACAGcgcacuuuugcccguACCCGCCg- -3'
miRNA:   3'- gcGUaGUGGUGGUUGUU---------------UGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 110401 0.68 0.890471
Target:  5'- aCGUGUCGCUGCaCAACAccaCCGCCUAc -3'
miRNA:   3'- -GCGUAGUGGUG-GUUGUuugGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 59402 0.66 0.9332
Target:  5'- uGCGUCGCC-CUgaaaAACAugauuGCCCACUCu -3'
miRNA:   3'- gCGUAGUGGuGG----UUGUu----UGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 53051 0.66 0.947686
Target:  5'- gGUGUCAuCCACC-ACAggUgCAUCCAg -3'
miRNA:   3'- gCGUAGU-GGUGGuUGUuuGgGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 84450 0.7 0.790874
Target:  5'- uGCgAUCGCC-CCAACGucGAUCUACCCc -3'
miRNA:   3'- gCG-UAGUGGuGGUUGU--UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 19438 0.69 0.835925
Target:  5'- --aGUCccCCGCCAAUGAACCCGCCg- -3'
miRNA:   3'- gcgUAGu-GGUGGUUGUUUGGGUGGgu -5'
11197 5' -53.3 NC_002816.1 + 8911 0.68 0.897331
Target:  5'- cCGUAUC-CCACCAGCAAcACCgcgugauucaGCCCu -3'
miRNA:   3'- -GCGUAGuGGUGGUUGUU-UGGg---------UGGGu -5'
11197 5' -53.3 NC_002816.1 + 117754 0.66 0.947686
Target:  5'- --uGUUACCACCAcACcgucccucaGAACCCACUCGa -3'
miRNA:   3'- gcgUAGUGGUGGU-UG---------UUUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 18199 0.69 0.852614
Target:  5'- gCGCAggGCCucuUCGGC--ACCCACCCAc -3'
miRNA:   3'- -GCGUagUGGu--GGUUGuuUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 32816 0.66 0.947686
Target:  5'- -aCAUCACCGCaguACuauacAACaCCACCCAc -3'
miRNA:   3'- gcGUAGUGGUGgu-UGu----UUG-GGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 30554 0.68 0.896656
Target:  5'- uGCAUCACCA-------ACCCACCCc -3'
miRNA:   3'- gCGUAGUGGUgguuguuUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 86885 0.68 0.876023
Target:  5'- gGCGUUcuauguCCACCAACAGACaCC-UCCAa -3'
miRNA:   3'- gCGUAGu-----GGUGGUUGUUUG-GGuGGGU- -5'
11197 5' -53.3 NC_002816.1 + 30652 0.67 0.910305
Target:  5'- cCGCGUUcaaaACCACCAcCAAACCC-CUa- -3'
miRNA:   3'- -GCGUAG----UGGUGGUuGUUUGGGuGGgu -5'
11197 5' -53.3 NC_002816.1 + 14141 0.67 0.927861
Target:  5'- gGguUCugaCACCAACGccGAUCCAUCCAc -3'
miRNA:   3'- gCguAGug-GUGGUUGU--UUGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 116047 0.66 0.937786
Target:  5'- -cCGUCACCAUCAacuguuuuauugcGCAguuaGACCCACUCu -3'
miRNA:   3'- gcGUAGUGGUGGU-------------UGU----UUGGGUGGGu -5'
11197 5' -53.3 NC_002816.1 + 27508 0.66 0.943111
Target:  5'- cCGCAuUCAgCGCCucCAAACCCuCCgCAu -3'
miRNA:   3'- -GCGU-AGUgGUGGuuGUUUGGGuGG-GU- -5'
11197 5' -53.3 NC_002816.1 + 8797 0.71 0.752017
Target:  5'- cCGU-UCACCACCAACA-GCUCGCgCAg -3'
miRNA:   3'- -GCGuAGUGGUGGUUGUuUGGGUGgGU- -5'
11197 5' -53.3 NC_002816.1 + 112057 0.7 0.790874
Target:  5'- gCGCAUCuCCucauCCAACAcguCCCACgCCGg -3'
miRNA:   3'- -GCGUAGuGGu---GGUUGUuu-GGGUG-GGU- -5'
11197 5' -53.3 NC_002816.1 + 32064 0.69 0.827278
Target:  5'- uGCccagCACCACC-ACA--UCCACCCAg -3'
miRNA:   3'- gCGua--GUGGUGGuUGUuuGGGUGGGU- -5'
11197 5' -53.3 NC_002816.1 + 40349 0.69 0.835925
Target:  5'- gGCGUguCCAaCGACAAACaauCCACCCGg -3'
miRNA:   3'- gCGUAguGGUgGUUGUUUG---GGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.