Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11322 | 3' | -55.3 | NC_003084.1 | + | 97922 | 0.66 | 0.877956 |
Target: 5'- -cGCACgGCuugGCCaACCACUGGugcgguUCACg -3' miRNA: 3'- guCGUGgUGu--UGG-UGGUGGCCu-----AGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 27114 | 0.66 | 0.877956 |
Target: 5'- -uGCACCACucuaCACaagACCGGAUCu- -3' miRNA: 3'- guCGUGGUGuug-GUGg--UGGCCUAGug -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 13887 | 0.66 | 0.871215 |
Target: 5'- uCAGCACgAUGACCACgucguggucgcuuuCCGGGUCGa -3' miRNA: 3'- -GUCGUGgUGUUGGUGgu------------GGCCUAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 55406 | 0.66 | 0.870455 |
Target: 5'- uCGGCAgCAgCAGCaGCaGCCGGAUCAa -3' miRNA: 3'- -GUCGUgGU-GUUGgUGgUGGCCUAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 51556 | 0.66 | 0.870455 |
Target: 5'- gCAGCACCGgu-CCACCuucaacCCGGGccCACg -3' miRNA: 3'- -GUCGUGGUguuGGUGGu-----GGCCUa-GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 92899 | 0.66 | 0.870455 |
Target: 5'- gCAGUACCACAugucCCGgUugUGGA-CACa -3' miRNA: 3'- -GUCGUGGUGUu---GGUgGugGCCUaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 25474 | 0.66 | 0.862724 |
Target: 5'- -cGCACCGgc-CCGCCACCGuGUCGg -3' miRNA: 3'- guCGUGGUguuGGUGGUGGCcUAGUg -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 2762 | 0.66 | 0.857979 |
Target: 5'- cCAGCAaacCCACAacccucgguaggaagGCCACCuugaGCCGuuUCACa -3' miRNA: 3'- -GUCGU---GGUGU---------------UGGUGG----UGGCcuAGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 56979 | 0.66 | 0.854771 |
Target: 5'- -uGCACCGCuGCCGCCcaauUCGGAcaACa -3' miRNA: 3'- guCGUGGUGuUGGUGGu---GGCCUagUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 93550 | 0.66 | 0.854771 |
Target: 5'- -cGCACCAuCGAgUGCCACuCGGGUacCGCa -3' miRNA: 3'- guCGUGGU-GUUgGUGGUG-GCCUA--GUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 101469 | 0.66 | 0.846603 |
Target: 5'- -cGCGCCAauauugGGCCACCACCuGGGccgucgUUACg -3' miRNA: 3'- guCGUGGUg-----UUGGUGGUGG-CCU------AGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 91093 | 0.66 | 0.846603 |
Target: 5'- gGGCGCCAgGGCCACaCGuuGGuGUC-Cg -3' miRNA: 3'- gUCGUGGUgUUGGUG-GUggCC-UAGuG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 101941 | 0.66 | 0.838226 |
Target: 5'- cCAuCACCGCGGCUcgCGCCGG-UCACg -3' miRNA: 3'- -GUcGUGGUGUUGGugGUGGCCuAGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 42596 | 0.67 | 0.829649 |
Target: 5'- gCAuaACCGCGAgCACCggucguGCCGGAUCu- -3' miRNA: 3'- -GUcgUGGUGUUgGUGG------UGGCCUAGug -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 67194 | 0.67 | 0.829649 |
Target: 5'- --uUACCGCuagaguCCACCACCGuGAUCuGCg -3' miRNA: 3'- gucGUGGUGuu----GGUGGUGGC-CUAG-UG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 7014 | 0.67 | 0.82088 |
Target: 5'- uCAGCACCACcguaucCCACCAC-GGucCACa -3' miRNA: 3'- -GUCGUGGUGuu----GGUGGUGgCCuaGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 3433 | 0.67 | 0.82088 |
Target: 5'- gCAGCACCAgCAG-CACCAgCGGAg--- -3' miRNA: 3'- -GUCGUGGU-GUUgGUGGUgGCCUagug -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 70158 | 0.67 | 0.82088 |
Target: 5'- aAGCACCGCcGCUACaACUGG-UUACg -3' miRNA: 3'- gUCGUGGUGuUGGUGgUGGCCuAGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 4544 | 0.67 | 0.82088 |
Target: 5'- uCAGCugAUCGaugaAACCACCGCCaauuuGAUCACa -3' miRNA: 3'- -GUCG--UGGUg---UUGGUGGUGGc----CUAGUG- -5' |
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11322 | 3' | -55.3 | NC_003084.1 | + | 105321 | 0.67 | 0.82088 |
Target: 5'- aAGUACUGCGACCGggugaUACCGGAgcuggCACc -3' miRNA: 3'- gUCGUGGUGUUGGUg----GUGGCCUa----GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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