miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11322 3' -55.3 NC_003084.1 + 97922 0.66 0.877956
Target:  5'- -cGCACgGCuugGCCaACCACUGGugcgguUCACg -3'
miRNA:   3'- guCGUGgUGu--UGG-UGGUGGCCu-----AGUG- -5'
11322 3' -55.3 NC_003084.1 + 27114 0.66 0.877956
Target:  5'- -uGCACCACucuaCACaagACCGGAUCu- -3'
miRNA:   3'- guCGUGGUGuug-GUGg--UGGCCUAGug -5'
11322 3' -55.3 NC_003084.1 + 13887 0.66 0.871215
Target:  5'- uCAGCACgAUGACCACgucguggucgcuuuCCGGGUCGa -3'
miRNA:   3'- -GUCGUGgUGUUGGUGgu------------GGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 92899 0.66 0.870455
Target:  5'- gCAGUACCACAugucCCGgUugUGGA-CACa -3'
miRNA:   3'- -GUCGUGGUGUu---GGUgGugGCCUaGUG- -5'
11322 3' -55.3 NC_003084.1 + 51556 0.66 0.870455
Target:  5'- gCAGCACCGgu-CCACCuucaacCCGGGccCACg -3'
miRNA:   3'- -GUCGUGGUguuGGUGGu-----GGCCUa-GUG- -5'
11322 3' -55.3 NC_003084.1 + 55406 0.66 0.870455
Target:  5'- uCGGCAgCAgCAGCaGCaGCCGGAUCAa -3'
miRNA:   3'- -GUCGUgGU-GUUGgUGgUGGCCUAGUg -5'
11322 3' -55.3 NC_003084.1 + 25474 0.66 0.862724
Target:  5'- -cGCACCGgc-CCGCCACCGuGUCGg -3'
miRNA:   3'- guCGUGGUguuGGUGGUGGCcUAGUg -5'
11322 3' -55.3 NC_003084.1 + 2762 0.66 0.857979
Target:  5'- cCAGCAaacCCACAacccucgguaggaagGCCACCuugaGCCGuuUCACa -3'
miRNA:   3'- -GUCGU---GGUGU---------------UGGUGG----UGGCcuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 93550 0.66 0.854771
Target:  5'- -cGCACCAuCGAgUGCCACuCGGGUacCGCa -3'
miRNA:   3'- guCGUGGU-GUUgGUGGUG-GCCUA--GUG- -5'
11322 3' -55.3 NC_003084.1 + 56979 0.66 0.854771
Target:  5'- -uGCACCGCuGCCGCCcaauUCGGAcaACa -3'
miRNA:   3'- guCGUGGUGuUGGUGGu---GGCCUagUG- -5'
11322 3' -55.3 NC_003084.1 + 91093 0.66 0.846603
Target:  5'- gGGCGCCAgGGCCACaCGuuGGuGUC-Cg -3'
miRNA:   3'- gUCGUGGUgUUGGUG-GUggCC-UAGuG- -5'
11322 3' -55.3 NC_003084.1 + 101469 0.66 0.846603
Target:  5'- -cGCGCCAauauugGGCCACCACCuGGGccgucgUUACg -3'
miRNA:   3'- guCGUGGUg-----UUGGUGGUGG-CCU------AGUG- -5'
11322 3' -55.3 NC_003084.1 + 101941 0.66 0.838226
Target:  5'- cCAuCACCGCGGCUcgCGCCGG-UCACg -3'
miRNA:   3'- -GUcGUGGUGUUGGugGUGGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 42596 0.67 0.829649
Target:  5'- gCAuaACCGCGAgCACCggucguGCCGGAUCu- -3'
miRNA:   3'- -GUcgUGGUGUUgGUGG------UGGCCUAGug -5'
11322 3' -55.3 NC_003084.1 + 67194 0.67 0.829649
Target:  5'- --uUACCGCuagaguCCACCACCGuGAUCuGCg -3'
miRNA:   3'- gucGUGGUGuu----GGUGGUGGC-CUAG-UG- -5'
11322 3' -55.3 NC_003084.1 + 3433 0.67 0.82088
Target:  5'- gCAGCACCAgCAG-CACCAgCGGAg--- -3'
miRNA:   3'- -GUCGUGGU-GUUgGUGGUgGCCUagug -5'
11322 3' -55.3 NC_003084.1 + 70158 0.67 0.82088
Target:  5'- aAGCACCGCcGCUACaACUGG-UUACg -3'
miRNA:   3'- gUCGUGGUGuUGGUGgUGGCCuAGUG- -5'
11322 3' -55.3 NC_003084.1 + 4544 0.67 0.82088
Target:  5'- uCAGCugAUCGaugaAACCACCGCCaauuuGAUCACa -3'
miRNA:   3'- -GUCG--UGGUg---UUGGUGGUGGc----CUAGUG- -5'
11322 3' -55.3 NC_003084.1 + 105321 0.67 0.82088
Target:  5'- aAGUACUGCGACCGggugaUACCGGAgcuggCACc -3'
miRNA:   3'- gUCGUGGUGUUGGUg----GUGGCCUa----GUG- -5'
11322 3' -55.3 NC_003084.1 + 7014 0.67 0.82088
Target:  5'- uCAGCACCACcguaucCCACCAC-GGucCACa -3'
miRNA:   3'- -GUCGUGGUGuu----GGUGGUGgCCuaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.