miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11334 3' -57.5 NC_003084.1 + 88783 0.66 0.772363
Target:  5'- aAGCACCACC-GC-AUGGCcgacCCCACc- -3'
miRNA:   3'- aUCGUGGUGGuUGaUGCCG----GGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 68733 0.66 0.772363
Target:  5'- uUAGCACgACCGACacCGGgUCCACu- -3'
miRNA:   3'- -AUCGUGgUGGUUGauGCCgGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 73063 0.66 0.772363
Target:  5'- gGGCGCUGCuuCAAC-AUGGCCCCAg-- -3'
miRNA:   3'- aUCGUGGUG--GUUGaUGCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 65592 0.66 0.772363
Target:  5'- cGGCA-CACCAACggUGGUCCCAUa- -3'
miRNA:   3'- aUCGUgGUGGUUGauGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 29630 0.66 0.769483
Target:  5'- cAGCGCCGCgGugucgauuagugucAUUAUGGCCgucuuaCCACGAu -3'
miRNA:   3'- aUCGUGGUGgU--------------UGAUGCCGG------GGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 39527 0.66 0.758823
Target:  5'- aAGCA-CACCGGaauggggcgauuaUACGGCCCCggGCGGu -3'
miRNA:   3'- aUCGUgGUGGUUg------------AUGCCGGGG--UGCU- -5'
11334 3' -57.5 NC_003084.1 + 99786 0.66 0.752949
Target:  5'- -cGCACCACCGAaccguCcGCCUCACGu -3'
miRNA:   3'- auCGUGGUGGUUgau--GcCGGGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 37866 0.66 0.752949
Target:  5'- gAGC-CCAaCAuuugGCGGCCCCACa- -3'
miRNA:   3'- aUCGuGGUgGUuga-UGCCGGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 9411 0.66 0.74307
Target:  5'- gUAGCACCACCuguagcCGaGCCCCAg-- -3'
miRNA:   3'- -AUCGUGGUGGuugau-GC-CGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 103857 0.66 0.74307
Target:  5'- gAGCuCCACCGA--GCGGUCgCCACa- -3'
miRNA:   3'- aUCGuGGUGGUUgaUGCCGG-GGUGcu -5'
11334 3' -57.5 NC_003084.1 + 79867 0.66 0.723017
Target:  5'- gAGCACCACCucAGCUuCGGaUCCCuuuuuGCGGc -3'
miRNA:   3'- aUCGUGGUGG--UUGAuGCC-GGGG-----UGCU- -5'
11334 3' -57.5 NC_003084.1 + 35247 0.66 0.723017
Target:  5'- gUAGCACCACuugagCAugUGCGGUgUCACc- -3'
miRNA:   3'- -AUCGUGGUG-----GUugAUGCCGgGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 25486 0.66 0.723017
Target:  5'- cAGCugUACCAACgcacCGGCCCgcCACc- -3'
miRNA:   3'- aUCGugGUGGUUGau--GCCGGG--GUGcu -5'
11334 3' -57.5 NC_003084.1 + 80274 0.67 0.712863
Target:  5'- -uGCACCACCAugcgaccaaUGCGuGCuCCCAgCGAg -3'
miRNA:   3'- auCGUGGUGGUug-------AUGC-CG-GGGU-GCU- -5'
11334 3' -57.5 NC_003084.1 + 53015 0.67 0.702638
Target:  5'- cAGCACCACCuggGCUcGCGGUCguggUCACGu -3'
miRNA:   3'- aUCGUGGUGGu--UGA-UGCCGG----GGUGCu -5'
11334 3' -57.5 NC_003084.1 + 74311 0.67 0.702638
Target:  5'- cGGCAUCACCAguucACUGuagcgcUGGCgCCACGu -3'
miRNA:   3'- aUCGUGGUGGU----UGAU------GCCGgGGUGCu -5'
11334 3' -57.5 NC_003084.1 + 48197 0.67 0.69235
Target:  5'- gUAGCACCACUccucgACGcacaCCCCACGGg -3'
miRNA:   3'- -AUCGUGGUGGuuga-UGCc---GGGGUGCU- -5'
11334 3' -57.5 NC_003084.1 + 44165 0.67 0.68201
Target:  5'- gAGCGCCgcauugaugACCAGC-GCGGCUCCAa-- -3'
miRNA:   3'- aUCGUGG---------UGGUUGaUGCCGGGGUgcu -5'
11334 3' -57.5 NC_003084.1 + 68301 0.68 0.650769
Target:  5'- -uGCACCACCAAC--CGGuUCCCAUa- -3'
miRNA:   3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5'
11334 3' -57.5 NC_003084.1 + 91843 0.68 0.650769
Target:  5'- -uGCugCugCuGCUGCGGCUgCAUGGu -3'
miRNA:   3'- auCGugGugGuUGAUGCCGGgGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.