Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11334 | 3' | -57.5 | NC_003084.1 | + | 88783 | 0.66 | 0.772363 |
Target: 5'- aAGCACCACC-GC-AUGGCcgacCCCACc- -3' miRNA: 3'- aUCGUGGUGGuUGaUGCCG----GGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 68733 | 0.66 | 0.772363 |
Target: 5'- uUAGCACgACCGACacCGGgUCCACu- -3' miRNA: 3'- -AUCGUGgUGGUUGauGCCgGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 73063 | 0.66 | 0.772363 |
Target: 5'- gGGCGCUGCuuCAAC-AUGGCCCCAg-- -3' miRNA: 3'- aUCGUGGUG--GUUGaUGCCGGGGUgcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 65592 | 0.66 | 0.772363 |
Target: 5'- cGGCA-CACCAACggUGGUCCCAUa- -3' miRNA: 3'- aUCGUgGUGGUUGauGCCGGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 29630 | 0.66 | 0.769483 |
Target: 5'- cAGCGCCGCgGugucgauuagugucAUUAUGGCCgucuuaCCACGAu -3' miRNA: 3'- aUCGUGGUGgU--------------UGAUGCCGG------GGUGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 39527 | 0.66 | 0.758823 |
Target: 5'- aAGCA-CACCGGaauggggcgauuaUACGGCCCCggGCGGu -3' miRNA: 3'- aUCGUgGUGGUUg------------AUGCCGGGG--UGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 99786 | 0.66 | 0.752949 |
Target: 5'- -cGCACCACCGAaccguCcGCCUCACGu -3' miRNA: 3'- auCGUGGUGGUUgau--GcCGGGGUGCu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 37866 | 0.66 | 0.752949 |
Target: 5'- gAGC-CCAaCAuuugGCGGCCCCACa- -3' miRNA: 3'- aUCGuGGUgGUuga-UGCCGGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 9411 | 0.66 | 0.74307 |
Target: 5'- gUAGCACCACCuguagcCGaGCCCCAg-- -3' miRNA: 3'- -AUCGUGGUGGuugau-GC-CGGGGUgcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 103857 | 0.66 | 0.74307 |
Target: 5'- gAGCuCCACCGA--GCGGUCgCCACa- -3' miRNA: 3'- aUCGuGGUGGUUgaUGCCGG-GGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 79867 | 0.66 | 0.723017 |
Target: 5'- gAGCACCACCucAGCUuCGGaUCCCuuuuuGCGGc -3' miRNA: 3'- aUCGUGGUGG--UUGAuGCC-GGGG-----UGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 35247 | 0.66 | 0.723017 |
Target: 5'- gUAGCACCACuugagCAugUGCGGUgUCACc- -3' miRNA: 3'- -AUCGUGGUG-----GUugAUGCCGgGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 25486 | 0.66 | 0.723017 |
Target: 5'- cAGCugUACCAACgcacCGGCCCgcCACc- -3' miRNA: 3'- aUCGugGUGGUUGau--GCCGGG--GUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 80274 | 0.67 | 0.712863 |
Target: 5'- -uGCACCACCAugcgaccaaUGCGuGCuCCCAgCGAg -3' miRNA: 3'- auCGUGGUGGUug-------AUGC-CG-GGGU-GCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 53015 | 0.67 | 0.702638 |
Target: 5'- cAGCACCACCuggGCUcGCGGUCguggUCACGu -3' miRNA: 3'- aUCGUGGUGGu--UGA-UGCCGG----GGUGCu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 74311 | 0.67 | 0.702638 |
Target: 5'- cGGCAUCACCAguucACUGuagcgcUGGCgCCACGu -3' miRNA: 3'- aUCGUGGUGGU----UGAU------GCCGgGGUGCu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 48197 | 0.67 | 0.69235 |
Target: 5'- gUAGCACCACUccucgACGcacaCCCCACGGg -3' miRNA: 3'- -AUCGUGGUGGuuga-UGCc---GGGGUGCU- -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 44165 | 0.67 | 0.68201 |
Target: 5'- gAGCGCCgcauugaugACCAGC-GCGGCUCCAa-- -3' miRNA: 3'- aUCGUGG---------UGGUUGaUGCCGGGGUgcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 68301 | 0.68 | 0.650769 |
Target: 5'- -uGCACCACCAAC--CGGuUCCCAUa- -3' miRNA: 3'- auCGUGGUGGUUGauGCC-GGGGUGcu -5' |
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11334 | 3' | -57.5 | NC_003084.1 | + | 91843 | 0.68 | 0.650769 |
Target: 5'- -uGCugCugCuGCUGCGGCUgCAUGGu -3' miRNA: 3'- auCGugGugGuUGAUGCCGGgGUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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