miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 16931 0.66 0.937878
Target:  5'- --aGUgAGCAcgaguCCACCucCGAUGaGCCCg -3'
miRNA:   3'- uuaCAaUCGU-----GGUGGuuGCUGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 66247 0.66 0.937878
Target:  5'- -cUGUUuGCACCccuCCucCGAgaGGCCCa -3'
miRNA:   3'- uuACAAuCGUGGu--GGuuGCUg-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68293 0.66 0.937878
Target:  5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3'
miRNA:   3'- -UUACaau-CGUGGUGGUUGcuGCC--GGG- -5'
11335 3' -53.2 NC_003084.1 + 75443 0.66 0.937878
Target:  5'- aAAUGUUGGguCCACUAGagUGGgGGCgCa -3'
miRNA:   3'- -UUACAAUCguGGUGGUU--GCUgCCGgG- -5'
11335 3' -53.2 NC_003084.1 + 37962 0.66 0.937878
Target:  5'- --aGUUAGC-CCaACCAA-GACgGGUCCa -3'
miRNA:   3'- uuaCAAUCGuGG-UGGUUgCUG-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 65592 0.66 0.937878
Target:  5'- -----cGGCA-CACCAACGGUGGUCCc -3'
miRNA:   3'- uuacaaUCGUgGUGGUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 97748 0.66 0.932705
Target:  5'- ------cGCACCGCgGAUaACGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGgUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 44165 0.66 0.932705
Target:  5'- -----gAGCGCCgcauugaugACCAGCG-CGGCuCCa -3'
miRNA:   3'- uuacaaUCGUGG---------UGGUUGCuGCCG-GG- -5'
11335 3' -53.2 NC_003084.1 + 27065 0.66 0.932705
Target:  5'- -----aAGCGCUACCAgugguuACGGauGCCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGU------UGCUgcCGGG- -5'
11335 3' -53.2 NC_003084.1 + 88777 0.66 0.927268
Target:  5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 96502 0.66 0.927268
Target:  5'- ----cUAGCGCCACgAACGcucGCCCa -3'
miRNA:   3'- uuacaAUCGUGGUGgUUGCugcCGGG- -5'
11335 3' -53.2 NC_003084.1 + 102997 0.66 0.921568
Target:  5'- cAAUGUgAGCACCgacagcACCAaaaACGuuguccaGGCCCa -3'
miRNA:   3'- -UUACAaUCGUGG------UGGU---UGCug-----CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 105639 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 1109 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 104677 0.66 0.921568
Target:  5'- ------uGCACCACCAGCGcCGaGUUCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUGCuGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 39107 0.66 0.914994
Target:  5'- ----cUGGCAgCACCGAuucaccccgagcuCGuGCGGCCCg -3'
miRNA:   3'- uuacaAUCGUgGUGGUU-------------GC-UGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 95103 0.67 0.909379
Target:  5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3'
miRNA:   3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 91233 0.67 0.896151
Target:  5'- -----aAGCACggaCACCAACGuguGGCCCu -3'
miRNA:   3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 75319 0.67 0.889155
Target:  5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3'
miRNA:   3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 20812 0.67 0.889155
Target:  5'- -----cGGCACgCAaacuCCAGCGcccaGCGGCCCa -3'
miRNA:   3'- uuacaaUCGUG-GU----GGUUGC----UGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.