miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 47746 0.66 0.900726
Target:  5'- --cGUUAacucGCGCCACCAAgugcaaagUUGCGGCUUg -3'
miRNA:   3'- uuaCGAU----CGUGGUGGUU--------GAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 97220 0.66 0.89389
Target:  5'- -cUGCUcGGcCAUCACCAAau-CGGCCa -3'
miRNA:   3'- uuACGA-UC-GUGGUGGUUgauGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 42474 0.66 0.89389
Target:  5'- --cGCUGGauucuCAUCACCAAgUACgGGCuCCa -3'
miRNA:   3'- uuaCGAUC-----GUGGUGGUUgAUG-CCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 43404 0.66 0.887521
Target:  5'- aGGUGCUcuucGGUACCGCgAACaagcgugaaucgaagGCGGUCCc -3'
miRNA:   3'- -UUACGA----UCGUGGUGgUUGa--------------UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 93837 0.66 0.886801
Target:  5'- --cGUagAGCgACCGCCgGACUGCGGCa- -3'
miRNA:   3'- uuaCGa-UCG-UGGUGG-UUGAUGCCGgg -5'
11336 3' -54.2 NC_003084.1 + 37145 0.66 0.886801
Target:  5'- --cGCUuugacGGauucuauCCACCAACUACGGaCCa -3'
miRNA:   3'- uuaCGA-----UCgu-----GGUGGUUGAUGCCgGG- -5'
11336 3' -54.2 NC_003084.1 + 65180 0.66 0.879463
Target:  5'- --cGCUagAGCGCCgguCAGCUgcACGGCCa -3'
miRNA:   3'- uuaCGA--UCGUGGug-GUUGA--UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 69962 0.66 0.879463
Target:  5'- cGUGCUGGCGCgCACguaaAACUgguuaggaccgAUGGUCCu -3'
miRNA:   3'- uUACGAUCGUG-GUGg---UUGA-----------UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 37437 0.66 0.871882
Target:  5'- cGAUGUUGGUACCACUauacuggaGACUuuGGCaCUg -3'
miRNA:   3'- -UUACGAUCGUGGUGG--------UUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 104762 0.66 0.871882
Target:  5'- --aGCagcGCACCACCAcaucCUcCGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUu---GAuGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 107037 0.66 0.867219
Target:  5'- --aGC-AGCACCACUggUUGCucaacugcaccgcagGGCCUa -3'
miRNA:   3'- uuaCGaUCGUGGUGGuuGAUG---------------CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 99378 0.66 0.864063
Target:  5'- --gGCc-GCAUCACCAAgUGgGGCUCg -3'
miRNA:   3'- uuaCGauCGUGGUGGUUgAUgCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68293 0.66 0.864063
Target:  5'- cGAUGaaguGCACCACCAAC--CGGuuCCCa -3'
miRNA:   3'- -UUACgau-CGUGGUGGUUGauGCC--GGG- -5'
11336 3' -54.2 NC_003084.1 + 6907 0.67 0.856013
Target:  5'- --cGagaUGGaCugCGCCAACUgGCGGCCa -3'
miRNA:   3'- uuaCg--AUC-GugGUGGUUGA-UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 95343 0.67 0.856013
Target:  5'- --cGCgcacggAGCACCACUGG--ACGGCCg -3'
miRNA:   3'- uuaCGa-----UCGUGGUGGUUgaUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 65414 0.67 0.83925
Target:  5'- cGAUGCU-GCaaGCCGCCGcaaUACGGUUCg -3'
miRNA:   3'- -UUACGAuCG--UGGUGGUug-AUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 20825 0.67 0.836662
Target:  5'- cAUGCaAGCGCaacggcacgcaaacuCCAGCgcccaGCGGCCCa -3'
miRNA:   3'- uUACGaUCGUGgu-------------GGUUGa----UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 61048 0.67 0.830552
Target:  5'- cGAUGC-AGU-CCACCAACUcuucgggcACgaGGCCCg -3'
miRNA:   3'- -UUACGaUCGuGGUGGUUGA--------UG--CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 88724 0.67 0.830552
Target:  5'- --cGCUgaAGC-CCAUCAagaugACUAUGGCCUc -3'
miRNA:   3'- uuaCGA--UCGuGGUGGU-----UGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 105480 0.67 0.821654
Target:  5'- --cGCgaauuGuCACCGCaCGACUugGGCuCCa -3'
miRNA:   3'- uuaCGau---C-GUGGUG-GUUGAugCCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.