miRNA display CGI


Results 1 - 20 of 60 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 54364 0.66 0.998664
Target:  5'- gGAGGUgGAGUGgugcgacuUUGGCACUugaGCUGCCg -3'
miRNA:   3'- aUUUCGaUUUAC--------AACCGUGG---UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 70084 0.66 0.998664
Target:  5'- gAAAGUUAGAUuc-GGCccGCCucACCACCa -3'
miRNA:   3'- aUUUCGAUUUAcaaCCG--UGG--UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 2223 0.66 0.998368
Target:  5'- cGGGGCUGuuGGUGcUGGaCACCuCgGCCa -3'
miRNA:   3'- aUUUCGAU--UUACaACC-GUGGuGgUGG- -5'
11337 5' -47.3 NC_003084.1 + 64725 0.66 0.998368
Target:  5'- gAAGGCccg--GUUGGCGCUggccauauGCCGCUu -3'
miRNA:   3'- aUUUCGauuuaCAACCGUGG--------UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 36002 0.66 0.998235
Target:  5'- uUGGAGCUGAAaaucGUcgaaccaucuuucGGUACCugCGCCa -3'
miRNA:   3'- -AUUUCGAUUUa---CAa------------CCGUGGugGUGG- -5'
11337 5' -47.3 NC_003084.1 + 22401 0.66 0.998018
Target:  5'- ---cGCUcGAUGgagGGCcgguGCCACCgGCCa -3'
miRNA:   3'- auuuCGAuUUACaa-CCG----UGGUGG-UGG- -5'
11337 5' -47.3 NC_003084.1 + 3987 0.66 0.997902
Target:  5'- gUGGAGCUGgaGGUGgUGGUugauucggacauuuGCCACUGCUa -3'
miRNA:   3'- -AUUUCGAU--UUACaACCG--------------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 94354 0.66 0.997608
Target:  5'- -cGAGUUGAAUGUggaaccGGCGgCAaCACCg -3'
miRNA:   3'- auUUCGAUUUACAa-----CCGUgGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 71044 0.66 0.997608
Target:  5'- aAAAGUUGGgacGUGgagUGGUGCUcaucgACCGCCg -3'
miRNA:   3'- aUUUCGAUU---UACa--ACCGUGG-----UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 99839 0.66 0.997608
Target:  5'- -cAAGCggacGUGUUGGCcgaGCCGuCCAgCCa -3'
miRNA:   3'- auUUCGauu-UACAACCG---UGGU-GGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 41863 0.67 0.997128
Target:  5'- uUGAGGUUc-AUGgcgUGGUAgUACCGCCg -3'
miRNA:   3'- -AUUUCGAuuUACa--ACCGUgGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 93993 0.67 0.997128
Target:  5'- --uAGUcAAA-GUUGGCACCAUCuuguGCCg -3'
miRNA:   3'- auuUCGaUUUaCAACCGUGGUGG----UGG- -5'
11337 5' -47.3 NC_003084.1 + 12540 0.67 0.997128
Target:  5'- -cGAGCUGGAccccauUGcggUGGUcCCACUACCc -3'
miRNA:   3'- auUUCGAUUU------ACa--ACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 35371 0.67 0.995929
Target:  5'- ---uGCUcAAg--UGGUGCUACCACCu -3'
miRNA:   3'- auuuCGAuUUacaACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 107907 0.67 0.995929
Target:  5'- --cAGUUAcccaAcgGUUGGCACCcggaCACCg -3'
miRNA:   3'- auuUCGAU----UuaCAACCGUGGug--GUGG- -5'
11337 5' -47.3 NC_003084.1 + 46409 0.67 0.995929
Target:  5'- ---cGCUGAAUGUUacGCACCGCacucucgACCg -3'
miRNA:   3'- auuuCGAUUUACAAc-CGUGGUGg------UGG- -5'
11337 5' -47.3 NC_003084.1 + 46880 0.67 0.995929
Target:  5'- ---uGCUcGAGUGUUuacgugcgGGCAcguucgguuCCACCACCa -3'
miRNA:   3'- auuuCGA-UUUACAA--------CCGU---------GGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 100966 0.67 0.995191
Target:  5'- gAAGGCUGca-GUcacCACCACCGCCg -3'
miRNA:   3'- aUUUCGAUuuaCAaccGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 64551 0.67 0.995191
Target:  5'- ---uGCUuagacGUGcUUGaGCACCGCUACCu -3'
miRNA:   3'- auuuCGAuu---UAC-AAC-CGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 1637 0.67 0.995191
Target:  5'- aUGGAGCUGcuguGGUGUcaacauuuUGGagcugaACCGCUACCu -3'
miRNA:   3'- -AUUUCGAU----UUACA--------ACCg-----UGGUGGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.