miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 5' -55.9 NC_003085.1 + 18762 0.66 0.638513
Target:  5'- gCCGCuGgAGCGGGCgauggacaaaGCGaaGGCGGCUGu -3'
miRNA:   3'- -GGUGuCgUCGUCCGg---------CGU--UCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 16996 0.66 0.638513
Target:  5'- gCCucggcCAGUAGCucauccaugAGGCCGCGGGCGu--- -3'
miRNA:   3'- -GGu----GUCGUCG---------UCCGGCGUUCGUugac -5'
11404 5' -55.9 NC_003085.1 + 29112 0.66 0.638513
Target:  5'- -aGCAGCGGCGacgcGGCgCGgaacCAGGCGAUUGa -3'
miRNA:   3'- ggUGUCGUCGU----CCG-GC----GUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 3082 0.66 0.638513
Target:  5'- gCACAGCGugacgagccGCAGGCCGacGGCGGaUGa -3'
miRNA:   3'- gGUGUCGU---------CGUCCGGCguUCGUUgAC- -5'
11404 5' -55.9 NC_003085.1 + 22175 0.66 0.631791
Target:  5'- -gACAGCAggaaauggcgaagguGCAGGCCGaggugcaGGGCGACc- -3'
miRNA:   3'- ggUGUCGU---------------CGUCCGGCg------UUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 30531 0.66 0.627309
Target:  5'- -gGCGGCGcGUGGaGCacaGCAGGCGAUUGg -3'
miRNA:   3'- ggUGUCGU-CGUC-CGg--CGUUCGUUGAC- -5'
11404 5' -55.9 NC_003085.1 + 30758 0.66 0.627309
Target:  5'- aCAgGGCauGGCAGGCagaGCAGcGCGACc- -3'
miRNA:   3'- gGUgUCG--UCGUCCGg--CGUU-CGUUGac -5'
11404 5' -55.9 NC_003085.1 + 35097 0.66 0.627309
Target:  5'- uCCGC-GCAGCcaGCCGCuGGCuuCUGu -3'
miRNA:   3'- -GGUGuCGUCGucCGGCGuUCGuuGAC- -5'
11404 5' -55.9 NC_003085.1 + 29597 0.66 0.627309
Target:  5'- gCC-CAGCcguccAGCAGGCCGaaguaguGCGACa- -3'
miRNA:   3'- -GGuGUCG-----UCGUCCGGCguu----CGUUGac -5'
11404 5' -55.9 NC_003085.1 + 11589 0.66 0.626189
Target:  5'- cCCAcCAGCaccuccgacgucuGGCcGGCCagcGCAGGCAGCg- -3'
miRNA:   3'- -GGU-GUCG-------------UCGuCCGG---CGUUCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 34523 0.66 0.626189
Target:  5'- gCgACAGCgucAGCAacacagcGGCCGCGAGCGcCa- -3'
miRNA:   3'- -GgUGUCG---UCGU-------CCGGCGUUCGUuGac -5'
11404 5' -55.9 NC_003085.1 + 25803 0.66 0.616109
Target:  5'- gCCugGGCGGCGuucgccugcgcGGCCuGCucGCGcuGCUGa -3'
miRNA:   3'- -GGugUCGUCGU-----------CCGG-CGuuCGU--UGAC- -5'
11404 5' -55.9 NC_003085.1 + 37441 0.66 0.61499
Target:  5'- gCGCAGCaccGGCAGGUgCGCcAGCGucaggccGCUGc -3'
miRNA:   3'- gGUGUCG---UCGUCCG-GCGuUCGU-------UGAC- -5'
11404 5' -55.9 NC_003085.1 + 40327 0.66 0.604924
Target:  5'- uCCGcCAGguGCcgcucccagagAGGUCGCGacAGCAACUc -3'
miRNA:   3'- -GGU-GUCguCG-----------UCCGGCGU--UCGUUGAc -5'
11404 5' -55.9 NC_003085.1 + 38984 0.66 0.604924
Target:  5'- gCCGC-GCAGCAGGUCGgccagcCGAGgGGCg- -3'
miRNA:   3'- -GGUGuCGUCGUCCGGC------GUUCgUUGac -5'
11404 5' -55.9 NC_003085.1 + 48288 0.66 0.593763
Target:  5'- gCCcCGGCAGCgucguAGGCCcuaccGCAAGCGAg-- -3'
miRNA:   3'- -GGuGUCGUCG-----UCCGG-----CGUUCGUUgac -5'
11404 5' -55.9 NC_003085.1 + 31792 0.66 0.593763
Target:  5'- gCGaAGCGGCccGGCCGCucGCGACg- -3'
miRNA:   3'- gGUgUCGUCGu-CCGGCGuuCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 28871 0.66 0.592649
Target:  5'- uCCGCGGCgcugccgAGCAGcaGUCGCAGGCGuCUc -3'
miRNA:   3'- -GGUGUCG-------UCGUC--CGGCGUUCGUuGAc -5'
11404 5' -55.9 NC_003085.1 + 8654 0.66 0.582636
Target:  5'- aCCGcCAGCAGCAcGGuuucagcccguCCGCGcGCGACg- -3'
miRNA:   3'- -GGU-GUCGUCGU-CC-----------GGCGUuCGUUGac -5'
11404 5' -55.9 NC_003085.1 + 39659 0.66 0.582636
Target:  5'- aCACcgAGCGGCGcGCgCGUGAGCAGCa- -3'
miRNA:   3'- gGUG--UCGUCGUcCG-GCGUUCGUUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.