Results 41 - 60 of 135 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11408 | 5' | -60.9 | NC_003085.1 | + | 31539 | 0.67 | 0.331238 |
Target: 5'- aGCGCCGCGcuggGC-GCAGGCacccgucuACGaCGCAg -3' miRNA: 3'- gCGCGGCGU----UGaCGUCCGc-------UGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 31139 | 0.68 | 0.293649 |
Target: 5'- gCGCGuuGCGGCUGCccuucGGaCGGCcaGCGCc -3' miRNA: 3'- -GCGCggCGUUGACGu----CC-GCUG--CGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 30807 | 0.76 | 0.073264 |
Target: 5'- gCGCGCCGCAGCaaucaccGCGGGCGACaagGCAa -3' miRNA: 3'- -GCGCGGCGUUGa------CGUCCGCUGcg-CGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 30680 | 0.7 | 0.195735 |
Target: 5'- uGCGCCucGCAuugGCUGCugaggAGGCGAagcgGCGCAa -3' miRNA: 3'- gCGCGG--CGU---UGACG-----UCCGCUg---CGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 30510 | 0.7 | 0.211078 |
Target: 5'- gCGCGCCaccgucgGCGGggccCUGUAGGCGAUgGCGCu -3' miRNA: 3'- -GCGCGG-------CGUU----GACGUCCGCUG-CGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29534 | 0.68 | 0.300892 |
Target: 5'- aGCGUCuuGGC-GCGGGCGuCGUGCGg -3' miRNA: 3'- gCGCGGcgUUGaCGUCCGCuGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29191 | 0.73 | 0.120796 |
Target: 5'- aGCGCCGCGAggacGCGGaGCGcACGCGCc -3' miRNA: 3'- gCGCGGCGUUga--CGUC-CGC-UGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29138 | 0.71 | 0.185241 |
Target: 5'- gGCGauugaguCCGCcuACUcGCAGGCGACGuCGCGg -3' miRNA: 3'- gCGC-------GGCGu-UGA-CGUCCGCUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 29106 | 0.66 | 0.389594 |
Target: 5'- gGCGUCaGCAGCgGCGacGCGGCGCGgAa -3' miRNA: 3'- gCGCGG-CGUUGaCGUc-CGCUGCGCgU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 28473 | 0.71 | 0.185729 |
Target: 5'- gGCGCUcacCGGCUGCGuGCuGACGCGCAa -3' miRNA: 3'- gCGCGGc--GUUGACGUcCG-CUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 28123 | 0.68 | 0.279573 |
Target: 5'- gCGCGCUcCAGCa--GGGUGAUGCGCGu -3' miRNA: 3'- -GCGCGGcGUUGacgUCCGCUGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 28115 | 0.68 | 0.293649 |
Target: 5'- gCGCGCCagaagcagguGCAguuGCUGCGGcCGACGCuGCu -3' miRNA: 3'- -GCGCGG----------CGU---UGACGUCcGCUGCG-CGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 27949 | 0.7 | 0.20836 |
Target: 5'- aGCGCCGCGACgacggGCuccaAGGgGAaccaguccaccacgcCGCGCAg -3' miRNA: 3'- gCGCGGCGUUGa----CG----UCCgCU---------------GCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 27654 | 0.69 | 0.259472 |
Target: 5'- gGaCGCCGCAucgccaccgacuACgGC-GGCGACGUGCu -3' miRNA: 3'- gC-GCGGCGU------------UGaCGuCCGCUGCGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 27353 | 0.66 | 0.355437 |
Target: 5'- gGCGCCGgGcuCUGCuGGGCGGCcugcuucuGCGCc -3' miRNA: 3'- gCGCGGCgUu-GACG-UCCGCUG--------CGCGu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26712 | 0.67 | 0.31579 |
Target: 5'- aGCGCgCGCAGg-GC-GGUGACgGCGCGg -3' miRNA: 3'- gCGCG-GCGUUgaCGuCCGCUG-CGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26457 | 0.73 | 0.127581 |
Target: 5'- gGCGCCagGACUGC-GGCG-CGCGCAc -3' miRNA: 3'- gCGCGGcgUUGACGuCCGCuGCGCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26207 | 0.69 | 0.234526 |
Target: 5'- uGCGCCuuguGC-GCGGGCGGCGCGg- -3' miRNA: 3'- gCGCGGcgu-UGaCGUCCGCUGCGCgu -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26133 | 0.66 | 0.389594 |
Target: 5'- aCGCgGCCGUggaacucgGGCUGCuGGCcaccGACGuCGCGg -3' miRNA: 3'- -GCG-CGGCG--------UUGACGuCCG----CUGC-GCGU- -5' |
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11408 | 5' | -60.9 | NC_003085.1 | + | 26103 | 0.68 | 0.293649 |
Target: 5'- aGUGCUGgGGCUGCGccucGGCGGCcggcgGCGCu -3' miRNA: 3'- gCGCGGCgUUGACGU----CCGCUG-----CGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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