miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11408 5' -60.9 NC_003085.1 + 36356 0.66 0.407459
Target:  5'- cCGCGCucaCGCAcCU-CAGcGCGGCGUGCc -3'
miRNA:   3'- -GCGCG---GCGUuGAcGUC-CGCUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 40537 0.67 0.347234
Target:  5'- aCGCGCUGC-ACUucGgAGGCGucgAgGCGCAa -3'
miRNA:   3'- -GCGCGGCGuUGA--CgUCCGC---UgCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 16509 0.67 0.331238
Target:  5'- -uCGCCGCAA--GCAuGGCaGGCGCGCc -3'
miRNA:   3'- gcGCGGCGUUgaCGU-CCG-CUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 47896 1 0.001132
Target:  5'- cCGCGCCGC-ACUGCAGGCGACGCGCAc -3'
miRNA:   3'- -GCGCGGCGuUGACGUCCGCUGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 19209 0.66 0.389594
Target:  5'- gGgGCgGCGGggGCuGGGCGcCGCGCAa -3'
miRNA:   3'- gCgCGgCGUUgaCG-UCCGCuGCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 6288 0.66 0.389594
Target:  5'- cCGCGCggcgguggaGCGACUggaGCAGGCcGAgcgggaacCGCGCAg -3'
miRNA:   3'- -GCGCGg--------CGUUGA---CGUCCG-CU--------GCGCGU- -5'
11408 5' -60.9 NC_003085.1 + 39114 0.66 0.372249
Target:  5'- aGCGuCCGCGG-UGCcucccgggAGGCGACGUgGCGg -3'
miRNA:   3'- gCGC-GGCGUUgACG--------UCCGCUGCG-CGU- -5'
11408 5' -60.9 NC_003085.1 + 8817 0.66 0.372249
Target:  5'- gCGCGgCGCAGCcaGCgucaGGGCGACGaggacgGCAg -3'
miRNA:   3'- -GCGCgGCGUUGa-CG----UCCGCUGCg-----CGU- -5'
11408 5' -60.9 NC_003085.1 + 9143 0.66 0.363776
Target:  5'- aCGCGCCaGCccUUGCcggcgagguagaGGGCGACGCuGCc -3'
miRNA:   3'- -GCGCGG-CGuuGACG------------UCCGCUGCG-CGu -5'
11408 5' -60.9 NC_003085.1 + 27353 0.66 0.355437
Target:  5'- gGCGCCGgGcuCUGCuGGGCGGCcugcuucuGCGCc -3'
miRNA:   3'- gCGCGGCgUu-GACG-UCCGCUG--------CGCGu -5'
11408 5' -60.9 NC_003085.1 + 39767 0.66 0.363776
Target:  5'- gGCGCUcCAGuCUGCAGG-GACGC-CAg -3'
miRNA:   3'- gCGCGGcGUU-GACGUCCgCUGCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 26032 0.66 0.363776
Target:  5'- -cUGCUGCGcCUGCuGGGCGAaGCGCu -3'
miRNA:   3'- gcGCGGCGUuGACG-UCCGCUgCGCGu -5'
11408 5' -60.9 NC_003085.1 + 45408 0.66 0.398462
Target:  5'- aGCGCCGuCAGCgaaaGCAuGG-GGCGCGg- -3'
miRNA:   3'- gCGCGGC-GUUGa---CGU-CCgCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 12385 0.66 0.362936
Target:  5'- gCGCGCCGUccacCUGCAuccgcacgucgucGGCGccaGCGCGg -3'
miRNA:   3'- -GCGCGGCGuu--GACGU-------------CCGCug-CGCGU- -5'
11408 5' -60.9 NC_003085.1 + 5948 0.66 0.395788
Target:  5'- gGCGCCGUucccguccacgccgGGCUGCuggAGGCGGUGgGCc -3'
miRNA:   3'- gCGCGGCG--------------UUGACG---UCCGCUGCgCGu -5'
11408 5' -60.9 NC_003085.1 + 530 0.66 0.371396
Target:  5'- gCGCGCUGCccucgcggagauuGGCgaacgGCgcgAGGCGGCGCGg- -3'
miRNA:   3'- -GCGCGGCG-------------UUGa----CG---UCCGCUGCGCgu -5'
11408 5' -60.9 NC_003085.1 + 43463 0.66 0.355437
Target:  5'- cCGCGCC-CAGCcGUAGGCGA-GC-CAa -3'
miRNA:   3'- -GCGCGGcGUUGaCGUCCGCUgCGcGU- -5'
11408 5' -60.9 NC_003085.1 + 2410 0.67 0.339168
Target:  5'- -cCGCCG-AGCUGguGGUgacgaaGACGCGCu -3'
miRNA:   3'- gcGCGGCgUUGACguCCG------CUGCGCGu -5'
11408 5' -60.9 NC_003085.1 + 24662 0.66 0.389594
Target:  5'- gCGCGCCGCGACggGCuGaGCGGCa---- -3'
miRNA:   3'- -GCGCGGCGUUGa-CGuC-CGCUGcgcgu -5'
11408 5' -60.9 NC_003085.1 + 2119 0.66 0.380855
Target:  5'- uGuCGCaCGCAuggauggGCaaGGGCGGCGCGCu -3'
miRNA:   3'- gC-GCG-GCGUuga----CG--UCCGCUGCGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.