miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 4786 0.66 0.359788
Target:  5'- cGGGUGCuggcauccGCCAGgacgggcccaaagCCCGGCaccgacacucugAGCCAACc -3'
miRNA:   3'- -CCCGCG--------UGGUCa------------GGGCCGg-----------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 12056 0.66 0.356488
Target:  5'- uGGCGCAUCGGUcacuaccugcCCCGGCguGaCGAg -3'
miRNA:   3'- cCCGCGUGGUCA----------GGGCCGguCgGUUg -5'
11409 5' -62 NC_003085.1 + 12324 0.66 0.356488
Target:  5'- aGGGUGCccGCCGucgccGUgCCCGGCgugacgguGCCAGCa -3'
miRNA:   3'- -CCCGCG--UGGU-----CA-GGGCCGgu------CGGUUG- -5'
11409 5' -62 NC_003085.1 + 31789 0.66 0.356488
Target:  5'- uGGGCGaAgCGG-CCCGGCC-GCUcGCg -3'
miRNA:   3'- -CCCGCgUgGUCaGGGCCGGuCGGuUG- -5'
11409 5' -62 NC_003085.1 + 10584 0.66 0.355666
Target:  5'- cGGGCGCagcACgAGgcagCCCaGGCUgagacauGGCCAAUg -3'
miRNA:   3'- -CCCGCG---UGgUCa---GGG-CCGG-------UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 34934 0.66 0.348329
Target:  5'- aGGCGCACgCGGcggaguUgCUGGCCGGCgGAg -3'
miRNA:   3'- cCCGCGUG-GUC------AgGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 30255 0.66 0.348329
Target:  5'- cGGCGC-CCAGcCCCcGCCgccccaGGCgGACg -3'
miRNA:   3'- cCCGCGuGGUCaGGGcCGG------UCGgUUG- -5'
11409 5' -62 NC_003085.1 + 27009 0.66 0.348329
Target:  5'- uGGUGCACgGGcCuuGGUguGCCuGCg -3'
miRNA:   3'- cCCGCGUGgUCaGggCCGguCGGuUG- -5'
11409 5' -62 NC_003085.1 + 33114 0.66 0.348329
Target:  5'- cGGUGC-CCuuGUCgUCGGCCAGagaCAGCg -3'
miRNA:   3'- cCCGCGuGGu-CAG-GGCCGGUCg--GUUG- -5'
11409 5' -62 NC_003085.1 + 11132 0.66 0.348329
Target:  5'- -cGCGUGCCAGgCCCGaGCUuuaGGCaCGACg -3'
miRNA:   3'- ccCGCGUGGUCaGGGC-CGG---UCG-GUUG- -5'
11409 5' -62 NC_003085.1 + 40122 0.66 0.340304
Target:  5'- cGGC-UGCUGGUCCUGGCC-GCCGcGCg -3'
miRNA:   3'- cCCGcGUGGUCAGGGCCGGuCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 11779 0.66 0.340304
Target:  5'- cGGCgGCGCCGcGcUCCgGGCguGUCGGCu -3'
miRNA:   3'- cCCG-CGUGGU-C-AGGgCCGguCGGUUG- -5'
11409 5' -62 NC_003085.1 + 30011 0.66 0.340304
Target:  5'- uGGGCG-GCCuuggcgacgucGUCCgCGGCUuccagGGCCAGCa -3'
miRNA:   3'- -CCCGCgUGGu----------CAGG-GCCGG-----UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 38773 0.66 0.340304
Target:  5'- cGGGcCGCGCgCAGggCUGGUguGuCCAGCa -3'
miRNA:   3'- -CCC-GCGUG-GUCagGGCCGguC-GGUUG- -5'
11409 5' -62 NC_003085.1 + 40963 0.66 0.340304
Target:  5'- uGGUGCGCgucGUaCUGGCgGGCCAGCg -3'
miRNA:   3'- cCCGCGUGgu-CAgGGCCGgUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 40272 0.66 0.340304
Target:  5'- aGGGCGCAggAGUaCCCGcGCCGaCCcACa -3'
miRNA:   3'- -CCCGCGUggUCA-GGGC-CGGUcGGuUG- -5'
11409 5' -62 NC_003085.1 + 42716 0.66 0.340304
Target:  5'- cGGCGCGgCAGg-CCGGgCAGUCGGa -3'
miRNA:   3'- cCCGCGUgGUCagGGCCgGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 1938 0.66 0.332414
Target:  5'- cGGGCuCGUCGGUCCCGG-UGGCCGu- -3'
miRNA:   3'- -CCCGcGUGGUCAGGGCCgGUCGGUug -5'
11409 5' -62 NC_003085.1 + 46687 0.66 0.331632
Target:  5'- uGGaGCGCcgccgcuGCCuGcUUCCGGCCAGCgGAg -3'
miRNA:   3'- -CC-CGCG-------UGGuC-AGGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 20195 0.66 0.324659
Target:  5'- cGGUGCACgA--CUgGGCCAGCCAcgACg -3'
miRNA:   3'- cCCGCGUGgUcaGGgCCGGUCGGU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.