miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 45045 0.66 0.472462
Target:  5'- -aCCGUcgGGCAccggaguagaugcgcGCCCAGCgUGCCGGAa- -3'
miRNA:   3'- aaGGCG--UUGU---------------UGGGUCG-GCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 24033 0.67 0.373455
Target:  5'- -gCCGCucaguGCuGCUCAGCCguugccguugaggGCCGGACGc -3'
miRNA:   3'- aaGGCGu----UGuUGGGUCGG-------------CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 27525 0.68 0.357103
Target:  5'- -cCUGCAugAAgCUGGCgaUGCCGGACAg -3'
miRNA:   3'- aaGGCGUugUUgGGUCG--GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 47558 1.05 0.000587
Target:  5'- cUUCCGCAACAACCCAGCCGCCGGACAc -3'
miRNA:   3'- -AAGGCGUUGUUGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 19130 0.66 0.458478
Target:  5'- -cCCGCGACAGCguccgCCAGggcCCGCUGGGu- -3'
miRNA:   3'- aaGGCGUUGUUG-----GGUC---GGCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 8625 0.66 0.458478
Target:  5'- gUUgGC--CAGCCCGGCCGCCGu-CAg -3'
miRNA:   3'- aAGgCGuuGUUGGGUCGGCGGCcuGU- -5'
11410 5' -59 NC_003085.1 + 8448 0.66 0.447647
Target:  5'- -gCCaGCGAC-GCCCAcggcgaugacgacGCCGCUGGGCc -3'
miRNA:   3'- aaGG-CGUUGuUGGGU-------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 22848 0.66 0.435996
Target:  5'- gUCCGCAgacgaggagGCGACggUCGaagaagagcgugucGCCGCCGGACu -3'
miRNA:   3'- aAGGCGU---------UGUUG--GGU--------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 35194 0.67 0.410435
Target:  5'- -aCgGCAGCAGCCUGGCCGCaCGu--- -3'
miRNA:   3'- aaGgCGUUGUUGGGUCGGCG-GCcugu -5'
11410 5' -59 NC_003085.1 + 14162 0.67 0.37433
Target:  5'- -gCCGCcGCGACCU-GCUGCCGaGCAa -3'
miRNA:   3'- aaGGCGuUGUUGGGuCGGCGGCcUGU- -5'
11410 5' -59 NC_003085.1 + 20351 0.67 0.392112
Target:  5'- gUUCCGCGccGCGucGCCgCuGCugaCGCCGGGCAa -3'
miRNA:   3'- -AAGGCGU--UGU--UGG-GuCG---GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 44131 0.66 0.419794
Target:  5'- cUCCGCGGCcacgcgcuuCUCGGUCGCCuucaGGACGg -3'
miRNA:   3'- aAGGCGUUGuu-------GGGUCGGCGG----CCUGU- -5'
11410 5' -59 NC_003085.1 + 12979 0.66 0.468444
Target:  5'- -aCUGCGucCAACCCuaaAGCCGCCaGuGGCAc -3'
miRNA:   3'- aaGGCGUu-GUUGGG---UCGGCGG-C-CUGU- -5'
11410 5' -59 NC_003085.1 + 45888 0.67 0.392112
Target:  5'- cUCgGCAGCGaggcgcgcuugcGCCCGGCCGCCu---- -3'
miRNA:   3'- aAGgCGUUGU------------UGGGUCGGCGGccugu -5'
11410 5' -59 NC_003085.1 + 9872 0.66 0.458478
Target:  5'- cUCCGCGACGcGCuCCAGCuUGCCaGugGc -3'
miRNA:   3'- aAGGCGUUGU-UG-GGUCG-GCGGcCugU- -5'
11410 5' -59 NC_003085.1 + 3537 0.66 0.429281
Target:  5'- -cCCGUGGCGACuCUGGCUGCCucucuGGGCGc -3'
miRNA:   3'- aaGGCGUUGUUG-GGUCGGCGG-----CCUGU- -5'
11410 5' -59 NC_003085.1 + 28615 0.67 0.383153
Target:  5'- -aCCGCAGCGgcgaGCUCGG-CGCCGGuCGc -3'
miRNA:   3'- aaGGCGUUGU----UGGGUCgGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 1484 0.67 0.365646
Target:  5'- cUCCGCGacuugcucgacGCGGCCCGuccGgCGCuCGGGCAa -3'
miRNA:   3'- aAGGCGU-----------UGUUGGGU---CgGCG-GCCUGU- -5'
11410 5' -59 NC_003085.1 + 715 0.66 0.458478
Target:  5'- cUCCGCGugGcGCCUgacgcGCCGCucaCGGACAg -3'
miRNA:   3'- aAGGCGUugU-UGGGu----CGGCG---GCCUGU- -5'
11410 5' -59 NC_003085.1 + 26164 0.66 0.448626
Target:  5'- cUCCaGCGGCAcCCCauAGCCG-UGGACGa -3'
miRNA:   3'- aAGG-CGUUGUuGGG--UCGGCgGCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.