miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 43587 0.66 0.723361
Target:  5'- cGGCgccACgGCAgaGGUCGcAGGCGCUgCCa -3'
miRNA:   3'- aCCGac-UG-CGUa-UCAGU-UCCGCGA-GG- -5'
11411 5' -54.6 NC_003085.1 + 8149 0.66 0.712473
Target:  5'- -aGCgccGCGCAUcaggcgaacgAGUCAAGGUGCUUg -3'
miRNA:   3'- acCGac-UGCGUA----------UCAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 40775 0.66 0.712473
Target:  5'- gUGGCUGACGU-UGG-CGGacggcaccccGGCGC-CCa -3'
miRNA:   3'- -ACCGACUGCGuAUCaGUU----------CCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 828 0.66 0.712473
Target:  5'- cGGCcugUGGCGCAaGGUgAAGGCauacgGCgCCa -3'
miRNA:   3'- aCCG---ACUGCGUaUCAgUUCCG-----CGaGG- -5'
11411 5' -54.6 NC_003085.1 + 43891 0.66 0.71138
Target:  5'- gGGCguagacgUGGCGCAccGUCGcGGCGCcaggCCc -3'
miRNA:   3'- aCCG-------ACUGCGUauCAGUuCCGCGa---GG- -5'
11411 5' -54.6 NC_003085.1 + 41151 0.66 0.694887
Target:  5'- cUGGCcgGAUGCcuccaacggcuaccUGGgCAAGGgGCUCCa -3'
miRNA:   3'- -ACCGa-CUGCGu-------------AUCaGUUCCgCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 2770 0.66 0.690463
Target:  5'- cUGGCcgGAaGCAggcAG-CGGcGGCGCUCCa -3'
miRNA:   3'- -ACCGa-CUgCGUa--UCaGUU-CCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 11884 0.66 0.690463
Target:  5'- cGcCUGagcGCGCcgAGuUCAuggccAGGCGCUCCa -3'
miRNA:   3'- aCcGAC---UGCGuaUC-AGU-----UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 41810 0.67 0.668219
Target:  5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3'
miRNA:   3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5'
11411 5' -54.6 NC_003085.1 + 630 0.67 0.668219
Target:  5'- gGGUUG-UGCugcGcCAAGGCGCUCg -3'
miRNA:   3'- aCCGACuGCGuauCaGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 31827 0.67 0.657039
Target:  5'- gUGGCUcACGCcug--CGcAGGUGCUCCg -3'
miRNA:   3'- -ACCGAcUGCGuaucaGU-UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 33109 0.67 0.657039
Target:  5'- cUGGgUGGCGCu--GUCGAa-CGCUCCc -3'
miRNA:   3'- -ACCgACUGCGuauCAGUUccGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 45598 0.67 0.645834
Target:  5'- cGGCgGGCGCGccGUCGAcGCGCcguggUCCu -3'
miRNA:   3'- aCCGaCUGCGUauCAGUUcCGCG-----AGG- -5'
11411 5' -54.6 NC_003085.1 + 8245 0.67 0.645834
Target:  5'- aGGCUGAgCGCAgcgAGUUccggAGGGUGCcaugagCCc -3'
miRNA:   3'- aCCGACU-GCGUa--UCAG----UUCCGCGa-----GG- -5'
11411 5' -54.6 NC_003085.1 + 2730 0.67 0.623397
Target:  5'- cGGCUGGCaGCGcgcgCgAAGGCGCUgCCc -3'
miRNA:   3'- aCCGACUG-CGUaucaG-UUCCGCGA-GG- -5'
11411 5' -54.6 NC_003085.1 + 13616 0.67 0.612186
Target:  5'- aGGCacaagUGGgGCAcgacugAGUCGcAGGCGCUCg -3'
miRNA:   3'- aCCG-----ACUgCGUa-----UCAGU-UCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 12775 0.67 0.612186
Target:  5'- gGGgUGAUGCcccugccgccGUuGUCGggcAGGUGCUCCa -3'
miRNA:   3'- aCCgACUGCG----------UAuCAGU---UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 45240 0.68 0.600992
Target:  5'- cGGCUGACGCucagcGUAacccgccgcgcGUCAGcGGCguccugcgucuGCUCCa -3'
miRNA:   3'- aCCGACUGCG-----UAU-----------CAGUU-CCG-----------CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 40332 0.68 0.600992
Target:  5'- gGGCUGGCGCGUGccUCAguGGGCGgUg- -3'
miRNA:   3'- aCCGACUGCGUAUc-AGU--UCCGCgAgg -5'
11411 5' -54.6 NC_003085.1 + 47736 0.68 0.599874
Target:  5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3'
miRNA:   3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.