miRNA display CGI


Results 41 - 60 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11415 5' -55.5 NC_003085.1 + 23439 0.68 0.550893
Target:  5'- cCAGCAggCGCagcagGGACGCaugaCgGAGGCCCa -3'
miRNA:   3'- uGUUGUa-GCG-----CUUGCGa---GgCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7938 0.68 0.550893
Target:  5'- cCAACucGUUGCGGauGCGUUCCauGGCCCu -3'
miRNA:   3'- uGUUG--UAGCGCU--UGCGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 32437 0.68 0.550893
Target:  5'- -gGGCGUCGUuggaccGAACGC-CCGcGGCCUc -3'
miRNA:   3'- ugUUGUAGCG------CUUGCGaGGCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 20627 0.68 0.572554
Target:  5'- cCGGCGcuUCGCGGACGCggacgaugaCGuGGCUCg -3'
miRNA:   3'- uGUUGU--AGCGCUUGCGag-------GCuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 7319 0.68 0.583462
Target:  5'- gACGGcCAUCGCGGAgGCggCUGAGGaCgCg -3'
miRNA:   3'- -UGUU-GUAGCGCUUgCGa-GGCUCC-GgG- -5'
11415 5' -55.5 NC_003085.1 + 12193 0.68 0.571466
Target:  5'- gGCGACGUCgagcgcuucccgGCGAACuggaagggaugggGCUCCaaggcuGGGCCCa -3'
miRNA:   3'- -UGUUGUAG------------CGCUUG-------------CGAGGc-----UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 29232 0.68 0.561695
Target:  5'- -gGACucaGCGAGgGCagCGAGGCCUa -3'
miRNA:   3'- ugUUGuagCGCUUgCGagGCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 39602 0.68 0.550893
Target:  5'- aGC-GCGUCGCgGAGCGCaCCGAgcagguGGCCg -3'
miRNA:   3'- -UGuUGUAGCG-CUUGCGaGGCU------CCGGg -5'
11415 5' -55.5 NC_003085.1 + 17669 0.69 0.529489
Target:  5'- ---cCGUCGCGAGCGg-CCG-GGCCg -3'
miRNA:   3'- uguuGUAGCGCUUGCgaGGCuCCGGg -5'
11415 5' -55.5 NC_003085.1 + 48806 0.69 0.529489
Target:  5'- gGCGACGUC-CGGGCgguGCUCgagcgccucgaCGAGGUCCg -3'
miRNA:   3'- -UGUUGUAGcGCUUG---CGAG-----------GCUCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14449 0.69 0.487669
Target:  5'- uACGGCuAUCGuCGAGCGCUUCGcGGaauuCCCu -3'
miRNA:   3'- -UGUUG-UAGC-GCUUGCGAGGCuCC----GGG- -5'
11415 5' -55.5 NC_003085.1 + 2270 0.69 0.487669
Target:  5'- gGCcuCGUCGCGGACuucuucgcggGCUCCGGcagcacggcgcuGGCCUg -3'
miRNA:   3'- -UGuuGUAGCGCUUG----------CGAGGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 21758 0.69 0.497985
Target:  5'- uACGACGUgGCGAGCaUUCU--GGCCCa -3'
miRNA:   3'- -UGUUGUAgCGCUUGcGAGGcuCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 28699 0.69 0.497985
Target:  5'- gACAACG-CGCGGA-GCUgCGcgcuGGCCCu -3'
miRNA:   3'- -UGUUGUaGCGCUUgCGAgGCu---CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 34449 0.69 0.507352
Target:  5'- gGCGACGUCGgccagcaUGAGCGuCUCUGGGacgcuGCCCu -3'
miRNA:   3'- -UGUUGUAGC-------GCUUGC-GAGGCUC-----CGGG- -5'
11415 5' -55.5 NC_003085.1 + 2348 0.69 0.508397
Target:  5'- uGCGACAUC-CGGgagGCGCagUgCGAGGCCg -3'
miRNA:   3'- -UGUUGUAGcGCU---UGCG--AgGCUCCGGg -5'
11415 5' -55.5 NC_003085.1 + 46729 0.69 0.5189
Target:  5'- gGCAGCGccuUCGCGcGCGCUgCCaGccGCCCg -3'
miRNA:   3'- -UGUUGU---AGCGCuUGCGA-GG-CucCGGG- -5'
11415 5' -55.5 NC_003085.1 + 48158 0.69 0.529489
Target:  5'- cGCGGCGUCGCGcucACGCUugaggauuUCGGcgcgcacgagguGGCCCa -3'
miRNA:   3'- -UGUUGUAGCGCu--UGCGA--------GGCU------------CCGGG- -5'
11415 5' -55.5 NC_003085.1 + 13268 0.69 0.533746
Target:  5'- cCAGCAg-GC-AGCGCUCCGcacggcgaacaucggAGGCCCc -3'
miRNA:   3'- uGUUGUagCGcUUGCGAGGC---------------UCCGGG- -5'
11415 5' -55.5 NC_003085.1 + 14409 0.69 0.529489
Target:  5'- aGC-GCAUCGCcuuggaGAUGCUCCGcgagggcuGGCCCu -3'
miRNA:   3'- -UGuUGUAGCGc-----UUGCGAGGCu-------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.