miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 34745 0.66 0.568109
Target:  5'- gGCAUCgCGcGGAGGUGACGgGUGUUCCc -3'
miRNA:   3'- gUGUAG-GC-UCUCUGCUGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 47462 0.66 0.568109
Target:  5'- cCGCAUCCGcucgguAGaAGugGACGgGCuGCUCa -3'
miRNA:   3'- -GUGUAGGC------UC-UCugCUGCgCG-CGGGg -5'
11430 3' -58.4 NC_003085.1 + 27098 0.66 0.568109
Target:  5'- gACGUCCGAGggcaucugGGACGuuucCGCGUcgucgcagacGCCCa -3'
miRNA:   3'- gUGUAGGCUC--------UCUGCu---GCGCG----------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 11444 0.66 0.567051
Target:  5'- aGCGgucgCCGuuGGGGcCGACGCggugugaGCGUCCCa -3'
miRNA:   3'- gUGUa---GGC--UCUCuGCUGCG-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 34001 0.66 0.564935
Target:  5'- cCGCGUCUGGGuucgcGGCGAugauucagggauacCGCucGCGUCCCa -3'
miRNA:   3'- -GUGUAGGCUCu----CUGCU--------------GCG--CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 29733 0.66 0.556495
Target:  5'- gGCGUCguCGcccaGGACGugGCcgccgucGCGCCCCa -3'
miRNA:   3'- gUGUAG--GCuc--UCUGCugCG-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 13419 0.66 0.556495
Target:  5'- -cCAUCCGGaAGACGggggcauACgGCGUGCCCa -3'
miRNA:   3'- guGUAGGCUcUCUGC-------UG-CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 15002 0.66 0.556495
Target:  5'- aGCGUCCcAGAGAcgcucaugcuggcCGACGuCGCcgGCUCCg -3'
miRNA:   3'- gUGUAGGcUCUCU-------------GCUGC-GCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 35056 0.66 0.547043
Target:  5'- aGCAUCUccaAGGCGAUGCGC-UCCCg -3'
miRNA:   3'- gUGUAGGcucUCUGCUGCGCGcGGGG- -5'
11430 3' -58.4 NC_003085.1 + 9181 0.66 0.547043
Target:  5'- --aGUCUGuGGGuCGGCGCggguacuccuGCGCCCUg -3'
miRNA:   3'- gugUAGGCuCUCuGCUGCG----------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 40794 0.66 0.547043
Target:  5'- gGCAccCCGGcgcccaAGGCcACGCGCGUCCCg -3'
miRNA:   3'- gUGUa-GGCUc-----UCUGcUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7334 0.66 0.545997
Target:  5'- gGCggCUGAG-GACG-CGggcuacaCGCGCCCCu -3'
miRNA:   3'- gUGuaGGCUCuCUGCuGC-------GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17221 0.66 0.536603
Target:  5'- gCGCcgCUGGuGAGcACG-CG-GCGCCCCg -3'
miRNA:   3'- -GUGuaGGCU-CUC-UGCuGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 36426 0.66 0.536603
Target:  5'- gCACGgagCCGGGAcucaccgugcgGAgGGCG-GCGCCUCa -3'
miRNA:   3'- -GUGUa--GGCUCU-----------CUgCUGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 12687 0.66 0.536603
Target:  5'- uGCcUCCGGGuGGAUGACGCcaCGCCgCu -3'
miRNA:   3'- gUGuAGGCUC-UCUGCUGCGc-GCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 10187 0.66 0.535562
Target:  5'- cCGCAgcgCCGuAGAGGaGGCGCGCagcacaugcugcgGCCCa -3'
miRNA:   3'- -GUGUa--GGC-UCUCUgCUGCGCG-------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 36982 0.66 0.526232
Target:  5'- uCugAUUCGuGAG-CGACG-GCGCCUUg -3'
miRNA:   3'- -GugUAGGCuCUCuGCUGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17675 0.66 0.526232
Target:  5'- gGCG-CUGAGAccGACGACGCG-GCCa- -3'
miRNA:   3'- gUGUaGGCUCU--CUGCUGCGCgCGGgg -5'
11430 3' -58.4 NC_003085.1 + 44164 0.66 0.515938
Target:  5'- uCGCGga-GGGAGGCGACuucggucuccaGgGCGUCCCg -3'
miRNA:   3'- -GUGUaggCUCUCUGCUG-----------CgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 48734 0.67 0.505725
Target:  5'- uCGCcuGUCCGuGAG-CGGCGCGUcagGCgCCa -3'
miRNA:   3'- -GUG--UAGGCuCUCuGCUGCGCG---CGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.